Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01054 ATGATGTCTGAGGTCCAACAGATTAACGGCACAAAAACGAAGACATTGGTGGTGGCGCCTCCGCCGTCGCCGCAAGTAGCAGTGGCGATTTGCTTGTTGAGAGGTAAATCGGTGCTAATGGGGCGTCGACTTGTATCGATTGGCAACTCCAAATATTCTCTCCCAAGTGGGCATCTTGAATTTGGCGAGACTTTTGAAGAATGTGCTGCAAGAGAGATGAAGGAAGAGACAGGTTTGGATATTGAGAAGGTTGAGTTTTTGAAAGTGACCAATAATTTGTTTCTGGACCAACCAACGCCGGCTCATTATGTGGTGGTGTTCGTGCGGGCGGTACTGGCTGTTCCCATGCAAACTCCGCTCAATCTTGAGCCTGACAAATGTGGTGGCTGGGATTGGTATGAATGGGATAGTCTGCCCCAACCACTCTTTGGTCCCATCAAAGCAATGGTTATGGAGGGCTTCAATCCTTTTCCATACTAA 480 48.12 MMSEVQQINGTKTKTLVVAPPPSPQVAVAICLLRGKSVLMGRRLVSIGNSKYSLPSGHLEFGETFEECAAREMKEETGLDIEKVEFLKVTNNLFLDQPTPAHYVVVFVRAVLAVPMQTPLNLEPDKCGGWDWYEWDSLPQPLFGPIKAMVMEGFNPFPY 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8767184 8767824 - CmaCh18G010540.1 Cma18g01054 314392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01054 159 PRINTS NUDIX hydrolase family signature 52 66 IPR020476 -
Cma18g01054 159 PRINTS NUDIX hydrolase family signature 66 81 IPR020476 -
Cma18g01054 159 SUPERFAMILY Nudix 20 154 IPR015797 -
Cma18g01054 159 PANTHER 8-OXO-DGTP DIPHOSPHATES NUDT15 18 158 - -
Cma18g01054 159 CDD Nudix_Hydrolase_19 24 147 - -
Cma18g01054 159 ProSiteProfiles Nudix hydrolase domain profile. 23 155 IPR000086 -
Cma18g01054 159 ProSitePatterns Nudix box signature. 57 78 IPR020084 GO:0016787
Cma18g01054 159 Pfam NUDIX domain 25 144 IPR000086 -
Cma18g01054 159 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 19 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01054 K03574 mutT, NUDT15, MTH2; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K20986 csv:101206191 248.054
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01999 Cma-Chr4:12081237 Cma18g01054 Cma-Chr18:8767184 1.10E-66 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g242 Blo01g00473 . Bda01g02105 . . . . . . Cmo18g01076 . Cma18g01054 . Car18g00978 Sed11g1579 Cpe09g00263 Cpe01g01752 Bhi07g01384 Tan04g0915 Cmetu10g1268 Lac13g0445 . . . Cla05g02342 Cam05g2515 Cec05g2541 Cco05g2582 Clacu05g2509 Cmu05g2371 Cre05g2488 . Cone19ag0867 . . Lsi04g00302 Csa05g02070 Chy10g01105 Cme10g00305 . . . . . Bpe02g02294 Bma01g00147 . . . . . . . . . . Bhi12g00827 . . . . . Lcy10g0854 Cla01g00566 Cam01g0589 Cec01g0581 Cco01g0605 Clacu01g0584 Cmu01g0555 Cre09g1952 Lsi09g00614 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001415 3 2 2 2 2 3 2 3 3 2 3 3 2 2 2 2 3 2 2 3 2 3 1 2 3 3 3 1 4 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01054 Cma_Chr18 FPKM 2.819672 1.91348 0.501857 0.476722 0.0 0.0 0.0 0.689671 0.440922 0.676563