Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01058 ATGTACAACCCTTCTGCTAGCTCAACTTTATATTCCATCCGGAGTAAAGGGTATCTTCCCCATTACTTAAACGAGCGACCCATCTTCTTAAATGAAAGATGTAATGGAAACCCATTGCATCTTTCATCATCATCATCATGTTCTTCTTGTTGTGTTTGCTATGCATTTCCAACCCACAGATTGCCTGTAGGCCCTAGCCTTTTCTATGGGTCGAGGCAATCCACCCTGCTTAAATGGTCGATTTCTAGGAGGTTGATGTTGTGTGGCCGAAATCGGTTCTGTTATACGCTTCCGGAATATGGGCATGTTCTGGATTGTTGTGAGGTTCCTTTCTCTATTGTTGATGATAAGGCTTGTCATTGTAGTGAGGGAAGGAGATATAGACAATATTGTTTGAATTCTGAGGGTGATTTTGAATGCCACGAATCGGATGGATTCGATGAAGAGGACATTGCTGAGGCAATGATCAGTTTGATAAGGGAGGGTTTTGGTAGTCAGGGGAAAAATAGGTCGTCTAAGAGGGTGGAAGTGGGGAACCGAGGAAAGTCCGGAGCTAAGGAGAGTAGTTTAAGTTCATCGAGAATGGTAGAACTCGAGAACAGGGCGAGGAGAGGTGTTGAGGATAAAAGGTTAAGTTCATTTGAAAAGATAAAAGTAGATAGAAAAAGAGAGAGTGGCGATCATTGCGAGAAAGAAGAGAGGAAAAGCAAACAGAATAATAAAGTTGGATCGATCGCGGTTGAGTTGAGGAAAAATGGATATAAACTGAATGGAGATCGGTTAGTTCATTCAAGAGGGGATAATCAGAGTTTGAGAAAAGAAGGGTCTACATGTTCATCTTATTATTCGCTTTCCTCCTCTGGGGATATTGAGGATGATGCTGAAGTGGAAGACAAGAACGTGCAATTCGTTGAGGAATTTTCCGGTGGGTACAGGTACGACTCTGTGAGTGATGTAGGAGAGAAATTAGATGGGCGGATCAAGGAAGAATACAAGAGTCAAGGAGATGATGAGAAGGGGCGAGAAGAGGAATCGATGCGGGGTGATACTACGGAAGGGAATCATGCTAATTGGCATTTGAGGAAGAACTCACAGAAGAAACCTAGCCAAGGATCAACACAAGTAACATCCTCTATAAGTGAAACCTCTGAGACGAACTGGAGATTGTCAAGGACTAGGGAAAGTGGTTATGTAGGTACTTCAAGTTCCAAGAAGAAGTTCGTTGACAAGGAAGAGGAATTGAAAATGGCCGCGACTTTGAACGAGCAATCAAAGCAAAATGTATCAGGTAATAAAGTGGGTGGTGTTTATATAAATGAAGGGAAAAAACTTGCTGAAGTATCAGAAATACGGCACGGTAAAGCTGAAGAAATTTCTCGTTCTCGTAAAAGACTTACCATTATGAATGAAAACCTAGAATTAGATGCAAATCTCGTTAAGAAAGCAAGCAATAGTAGTCATGAAACTGTTCGTCCTGTCCTTCAAGAAGAAAGTTTGAGACGAACTTCGTCAGAAAATAGGAAAACCGAGAGAGAAAGGACCTCTCATCAGATAAGTCAGTCAAATGCAGTGATTAACGCAAGCGAAAGTACCAACGTCCACGTAACTTCTAATCAAGAGGTTGAAGAAAGGCATCATCAAATAGGAAATCATGCCATTGGGGAAATGGGTTCAAGACAAAAATATCTTCATCTTGGTGTTATATCAGTAGCCAAAGATGGTAATACCAATACCTCTGTTTCAAGTTCTGAAGTTAGAACACGAAACGAGGAACAAAACGCTGCATCATTCAGTGCATCAAACCTCGTGGCTAAAGACAAAAAGTCTTCAATGGTACATAAAGCTGCTCCGAGCGTTATCTCCAGAAAAGGTTCGCAAGATGCCACTAACATTTCACCACTTCATGGGACTGATAAAGTATCTTCTACGTATTCTGAAAAAACATATGAAAATAGAATCTTTGAGCAAGAAACTAATAAATCATCAGTGGAAAAAACTGTCAAGGAAACCGTAATAAGAACTGGTCGAAATAATCATCGTGTGGGGCAATCTGAATCAGGAAACGAGGTTAGAGATCATGCAACAAAGTTAAAAGTTCATGGATTGTTTAATTCAAGTTCCCAAAGTAGTTACCAACGGATTGACGTGAATGAGCAAGAAAATAAAGGCTCGCAGGCTATGTTAATGCCTCCGCCATCTCAGCTTGTAGCTAGAAATCTGTCGCGAACAGATTCTACCAGTGAAATGGCAAGCCAAATAGTTTCGAGAAGAGCATCAGGAAGTTCGAGTGCTTCCTACGTGCAGTCAGGGGGAAGTCCAGTTTTGCACGGCAAGTCCTACAGAGAAAGCGGGGTAGACGAGAGTACTGGGGAGCCAACCTACCTCATCAATCCTGGTGATACTCTAGGCTCAGCTGACCATTTAGAGAGGTTGTCCGCACCGTTCGTTGGGGAATCCATTGAGAAGTCCAGGAATGAACTGTTGATTTCCGAAATCCAGAAGGAAGACAATGTCTCTGAAGTAGATTTACTGCATGAAGAGAAGCATCGACAGAAGAACTTTGTAGATTATCAAACGAAGGACCATGACTCGAAGCTCTCATCACGGAGTTCTGGAAGCAAGGGTCCTTCTGATGAAATGTGGCATGTAATGGACTCGACTACTGAGCAGCAGCCTCCGAAAACTGAAGATCCTGAGACTAGTGCACACAGTGAGAATGCAATTGTCAAGAGAAGTGGCAGATCGTTATGGAATGTCATTTCAGATATCGTTCGTCTCCGTTGGGCTTCACGTGCCGAAACCTCTGATTCAACTTTAAGATCAGGTGGAAGAAATTCACCAAACGAGTCTGTTAGTAACGAGACATGGTTTTCTGGCCGTGAACATGAAGAAACTGATAATACAAGAATCGGAAGAACCGCAGTTTCTCAATTCACTTCGTCGGATCGGTTAGAAGAACCAAAAAATACATATCATGAAGTAGATACCCCACCTTCCCCAAATGTAATGGAGATCAAGCCATCAAGTGAAACTTTGTTAATTTCTGGAGAGGCGATCTTAACCGATGGTAGGAAGGTTGATCTTATTTCTTCTGGTTCGGATATCGAACGGTCATCATTACCACTGTCTCCCCGAGGTTCTCTCGTCATCGACGAAATTTCTCATAGTGGTAAAACTGATGCCTCTGCAAGCAGCTCGGCTGAGCGGTTGGGGCGTTCTTCTGATGCAACATTACTAGAGATATCAACAACTGGAACCAAGGATGGGGAAGTGAAACAAAGGAAGCTTCAAAGAAACAAGCAAGTGCTTAAAGATCGATTTGACGAATGGGAAGAAGCATACATACTCGAGACTGAGCAGCGAAAAATGGACGAAATGTTCATGAGGGAAGCGCTTGCTGAAGCCAGGAAGGCAGCTGATACCTGGGAGGTGCCTGTGGGAGCAGTATTGGTGAAACATGGAAAAATTATCGCTCGTGGCTGCAACCTGGTCGAGGAGCTGCGAGATTCCACAGCCCATGCCGAAATGATTTGTATTCGGGAGGCTTCAAAGCAATTAAAGTCATGGAGGCTTGCTGAGACGACGCTGTACGTGACGCTTGAACCGTGCCCTATGTGCGCTGGAGCGATACTACAAGCACGAGTTGAAAACCTTGTGTGGGGAGCACCAAATAAGCTTCTTGGAGCTGATGGCAGCTGGATCAGACTTTTTCCTGATGGTGGCGAGGTAAATGCCTCAGAACAGTCTGAGAAGCCTGCTGCACCTGTGCATCCGTTCCACCCGAAAATGACGATACGACGAGGTATACTGGCGTCCGAATGTTCTGATGTAATGCAACACTTCTTTCAGCTAAGGAGACGAAAGAAAAAGAAGGAAAACACTCCACCTCTAACCATTGCTCATCATCATCATCCATCAAAATTTATTTCTAAGATGCACAATATTTTTCACATATTGTTCTATAATTATGGTGGCTTTGTTCATAATGTTTTACAGGTTTCATTTCAACGAACTGATGAACTGCGACATGAAATCATTTCCTTCGCGAAAGATTACAAGCGATTTAATGCCACAAATTCGGTTGTCATTGAAGGGTTGAGAGTTGCAAAATGGACGCATGAAGAGAAAGAGATGGAGAGACAGATAAATCGCGAAGAGAGCGCAATGGAGAGGAAGAGAGACCTTACCTGTTCTGCTGCGGTGCCCTGA 4209 43.17 MYNPSASSTLYSIRSKGYLPHYLNERPIFLNERCNGNPLHLSSSSSCSSCCVCYAFPTHRLPVGPSLFYGSRQSTLLKWSISRRLMLCGRNRFCYTLPEYGHVLDCCEVPFSIVDDKACHCSEGRRYRQYCLNSEGDFECHESDGFDEEDIAEAMISLIREGFGSQGKNRSSKRVEVGNRGKSGAKESSLSSSRMVELENRARRGVEDKRLSSFEKIKVDRKRESGDHCEKEERKSKQNNKVGSIAVELRKNGYKLNGDRLVHSRGDNQSLRKEGSTCSSYYSLSSSGDIEDDAEVEDKNVQFVEEFSGGYRYDSVSDVGEKLDGRIKEEYKSQGDDEKGREEESMRGDTTEGNHANWHLRKNSQKKPSQGSTQVTSSISETSETNWRLSRTRESGYVGTSSSKKKFVDKEEELKMAATLNEQSKQNVSGNKVGGVYINEGKKLAEVSEIRHGKAEEISRSRKRLTIMNENLELDANLVKKASNSSHETVRPVLQEESLRRTSSENRKTERERTSHQISQSNAVINASESTNVHVTSNQEVEERHHQIGNHAIGEMGSRQKYLHLGVISVAKDGNTNTSVSSSEVRTRNEEQNAASFSASNLVAKDKKSSMVHKAAPSVISRKGSQDATNISPLHGTDKVSSTYSEKTYENRIFEQETNKSSVEKTVKETVIRTGRNNHRVGQSESGNEVRDHATKLKVHGLFNSSSQSSYQRIDVNEQENKGSQAMLMPPPSQLVARNLSRTDSTSEMASQIVSRRASGSSSASYVQSGGSPVLHGKSYRESGVDESTGEPTYLINPGDTLGSADHLERLSAPFVGESIEKSRNELLISEIQKEDNVSEVDLLHEEKHRQKNFVDYQTKDHDSKLSSRSSGSKGPSDEMWHVMDSTTEQQPPKTEDPETSAHSENAIVKRSGRSLWNVISDIVRLRWASRAETSDSTLRSGGRNSPNESVSNETWFSGREHEETDNTRIGRTAVSQFTSSDRLEEPKNTYHEVDTPPSPNVMEIKPSSETLLISGEAILTDGRKVDLISSGSDIERSSLPLSPRGSLVIDEISHSGKTDASASSSAERLGRSSDATLLEISTTGTKDGEVKQRKLQRNKQVLKDRFDEWEEAYILETEQRKMDEMFMREALAEARKAADTWEVPVGAVLVKHGKIIARGCNLVEELRDSTAHAEMICIREASKQLKSWRLAETTLYVTLEPCPMCAGAILQARVENLVWGAPNKLLGADGSWIRLFPDGGEVNASEQSEKPAAPVHPFHPKMTIRRGILASECSDVMQHFFQLRRRKKKKENTPPLTIAHHHHPSKFISKMHNIFHILFYNYGGFVHNVLQVSFQRTDELRHEIISFAKDYKRFNATNSVVIEGLRVAKWTHEEKEMERQINREESAMERKRDLTCSAAVP 1402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8782182 8787451 - CmaCh18G010580.1 Cma18g01058 314396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01058 1402 MobiDBLite consensus disorder prediction 482 520 - -
Cma18g01058 1402 PANTHER TRNA(ADENINE(34)) DEAMINASE, CHLOROPLASTIC 890 1312 - -
Cma18g01058 1402 Coils Coil 455 475 - -
Cma18g01058 1402 Pfam MafB19-like deaminase 1124 1224 IPR028883 GO:0002100|GO:0008251
Cma18g01058 1402 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 1122 1244 IPR002125 -
Cma18g01058 1402 MobiDBLite consensus disorder prediction 742 772 - -
Cma18g01058 1402 Coils Coil 1093 1113 - -
Cma18g01058 1402 MobiDBLite consensus disorder prediction 933 955 - -
Cma18g01058 1402 SUPERFAMILY Cytidine deaminase-like 1106 1290 IPR016193 GO:0003824
Cma18g01058 1402 MobiDBLite consensus disorder prediction 222 239 - -
Cma18g01058 1402 MobiDBLite consensus disorder prediction 222 241 - -
Cma18g01058 1402 MobiDBLite consensus disorder prediction 852 868 - -
Cma18g01058 1402 MobiDBLite consensus disorder prediction 970 984 - -
Cma18g01058 1402 MobiDBLite consensus disorder prediction 324 405 - -
Cma18g01058 1402 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 890 1312 - -
Cma18g01058 1402 MobiDBLite consensus disorder prediction 933 1005 - -
Cma18g01058 1402 Coils Coil 1368 1395 - -
Cma18g01058 1402 MobiDBLite consensus disorder prediction 575 605 - -
Cma18g01058 1402 MobiDBLite consensus disorder prediction 324 356 - -
Cma18g01058 1402 MobiDBLite consensus disorder prediction 363 402 - -
Cma18g01058 1402 Hamap tRNA-specific adenosine deaminase [tadA]. 1128 1286 IPR028883 GO:0002100|GO:0008251
Cma18g01058 1402 CDD nucleoside_deaminase 1128 1235 - -
Cma18g01058 1402 MobiDBLite consensus disorder prediction 493 515 - -
Cma18g01058 1402 MobiDBLite consensus disorder prediction 622 643 - -
Cma18g01058 1402 Gene3D Cytidine Deaminase, domain 2 1111 1297 - -
Cma18g01058 1402 MobiDBLite consensus disorder prediction 742 793 - -
Cma18g01058 1402 MobiDBLite consensus disorder prediction 852 907 - -
Cma18g01058 1402 MobiDBLite consensus disorder prediction 575 643 - -
Cma18g01058 1402 MobiDBLite consensus disorder prediction 165 196 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01058 K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] - csv:101215576 1848.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01048 Cma-Chr10:6391006 Cma18g01058 Cma-Chr18:8782182 1.73E-17 dispersed
Cma11g00361 Cma-Chr11:1797585 Cma18g01058 Cma-Chr18:8782182 3.51E-14 dispersed
Cma11g00999 Cma-Chr11:5387031 Cma18g01058 Cma-Chr18:8782182 2.77E-17 dispersed
Cma18g01058 Cma-Chr18:8782182 Cma10g00376 Cma-Chr10:1720060 4.94E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g220 . . . . . . Bma14g01686 . . Cmo18g01080 . Cma18g01058 . Car18g00983 Sed08g1290 Cpe09g00259 . Bhi07g01388 Tan04g0923 Cmetu02g0302 Lac13g0441 Hepe10g1853 . . Cla05g02348 Cam05g2519 Cec05g2546 Cco05g2588 Clacu05g2514 Cmu05g2376 Cre05g2492 Cone13ag0870 Cone19ag0871 . . Lsi04g00307 Csa05g02561 Chy10g01101 Cme10g00309 . Blo11g00821 Bda07g01517 . Bpe11g01679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010359 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01058 Cma_Chr18 FPKM 11.244951 11.53561 13.454633 12.978519 14.346853 15.609813 14.196322 14.822215 14.117567 12.630993