Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01061 ATGAGCGGCGGCAGAAGGAGGAAGCTGCATTTTAGCAAGATCTACTCGTTTGCGTGTGGGAAAGCTTCTTTGAAAGATGATCACTCACAGATTGGGGGTCCGGGGTTTTCTCGAGTGGTGTTCTGTAATGAAGCTGAGTGTATTGAGGCTGAAATACGTAACTATGTTGATAATCATGTTAGTACCACGAAGTATACTTTGGCTACTTTCTTGCCCAAGTCATTGTTTGAACAATTCAGGAGGGTGGCTAATTTCTTCTTTTTAGTGACTGGGATTCTTGCTTTTACTCCCCTTGCTCCTTACACAGCCGTCAGTGCAATTCTTCCTCTTATTATTGTCATTTCAGCTACTATGATCAAAGAAGGTATTGAAGATTGGAGGCGGAAGAAACAGGATATTCAGGTTAACACTAGAAAGGTTAAAGTGCATCAAGGTAATGGAGTTTTTGCTCATACAGAGTGGAAAACTTTGAGGGTGGGTAATGTAGTGAGAGTGGAAAAGGATGAATTCTTTCCAGCAGATATCATCTTGCTTTCATCCAGTTACGAGGATGCCATCTGCTATGTCGAGACAATGAACCTTGACGGTGAGACAAATTTGAAACTAAAACAAGCATTGGAGGTAACTTCGCGTATGAACGAGGATTCGATCTTCAAAAGCTTTAAGGCTATCATAAAATGTGAGGATCCAAATGCAAATTTATACAGTTTTGTTGGAAGTATGGAGTTGGAAGAGCAACAATATCCGCTATCACCTCAACAACTACTCCTTCGAGACTCGAAACTCCGGAATACAGATTATATATATGGGGTTGTTGTCTTTACGGGTCGCGACACAAAGGTTTTTCAAAATTCTACTGACCCGCCTTCGAAAAGAAGCAAAGTTGAGAGGAAAATGGATCAAATTATATACTTTTTGTTTGGTCTTCTGTTCTTGCTTGCTCTTATAGGATCTATATTTTTTGGCTTTGTGACTGGCGATGATTTGAACAATGGGAAAATGAAGAGATGGTATCTCAGGCCTGATGATGCTGAAGTTTTCTATGATTCAAAAAGAGCTCCATTAGCTGCAATTTTCCATTTTCTTACAGCCCTGATGTTGTATAACTACTTCATTCCGATATCACTCTATGTGTCGATAGAGATCGTGAAAGTTCTTCAGAGCATATTCATCAATCAAGATATTAATATGTACTACGAAGAAGCTAATAAGCCTGCACGTGCTCGCACCTCGAATTTGAATGAAGAACTTGGTCAAGTTGATACGGTACTTTCTGACAAGACGGGAACCCTGACGTGTAATTCGATGGAGTTCATCAAGTGTTCAGTGGCCGGGACGGCTTATGGTCGTGGTTTCACAGAGGTAGAAAGGGCTATTGGTGGACTGAAGAATTCACCATTGTATGAAGCTGTAAATGGGGGGAATCAACAAGAGGATGACACTAAGAAAACTTCACATGTCAAGGGCTTTAACTTTCAAGATGATAGAGTTATGAATGGGAACTGGGTTTATGAGCCTAATGCAAATGTCATCCAAATGTTTTTTCGTCTTCTTGCCACTTGTCATACGGCGATACCTGAAATCAACGAGCACAGTGGCGAGGTGTCTTATGAGGCCGAATCACCGGATGAAGCAGCATTTGTGATTGCAGCTAGGGAGCTAGGCTTTGAGTTCTATAAAAGAACACAGACAAGCATATCACTCCATGAGTTTGAACCTTCATTAGGCAAGAAAGTTGATAGGACATATAAACTGTTGCATGTTTTGGAGTTCAATAGCATGAGAAAGCGGATGTCTGTCATAATAAGAAACGAGGAGGGGAAAATAATATTATTCTGTAAAGGTGCAGACAGTGTCATGTTTGAAAGGCTTGGAAAGAATGGAAGGGAGTTTGAAGAGAGGACTAAGGAACATGTCAGCGAGTACGCCGATGCAGGGTTGAGGACTTTGATACTCGCCTACCGTGAGCTTGACGAGGAAGAATACAGAGAATTTCATCATAAGTTCACTATGGCCAAAACCTCAGTTGATGCAGATAGAGAATCATTGATTGATAAACTTACAGACAAAATTGAGAAGAATCTAATTCTTCTTGGTGCCACTGCTGTTGAGGACAAGCTTCAAAATGGGGTTCCTGAGTGCATCGACAGGCTCGCTCAGGCGGGAATTAAGATCTGGGTTTTGACGGGCGACAAAATGGAGACTGCCATAAATATTGGTTTTGCCTGTAGCTTACTAAGAGAAGATATGAAGCAGATTGTCATTACTCTGGAGTCATCAGAAATTCAGGCAATAGAGAAGTCAGGGGATAAGACTTCCATCATCAAGGCGTCGAGGCAATGTGTTCGTGATCAGATTACTCGAGGGAGAGCTCAGATCAATTCATCAAGTGGGTCATCTGAAGCATTTGCATTAATCATTGATGGAAAATCGCTTTCTTATGCTTTAGAGGACAGTATGAAGGCATCGTTTCTCGATCTAACGATACGTTGCGCTTCTGTTATTTGCTGCCGTTCATCTCCAAAACAGAAGGCATTGGTAACAAGGTTGGTTAAAACTGGAACACGAAAAACAACTTTAGCTATCGGCGATGGTGCTAACGATGTAGGAATGCTTCAAGAAGCAGATATTGGAGTCGGAATTAGCGGTGCTGAAGGAATGCAGGCCGTTATGTCGAGTGACGTTGCGATTGCTCAGTTTAAATATTTAGAGCGCCTGCTTCTCGTGCATGGACATTGGTGCTACAGAAGGATATCATCAATGATTTGCTACTTCTTCTATAAGAATATCACTTTTGGTTTTACCATATTCTTATACGAAGCATTCACATCATTCTCTGGGGAACCTGTATATAATGATTGGTTTTTATCACTTTACAATGTTTTCTTCTCGTCGCTTCCAGTCGTAGCTTTGGGAGTCTTCGATCAGGACGTATCTGCAAGGCTCTGCCTCCAGTTTCCTCTCTTATACCAACAAGGGGTGCAGAATGTTCATTTCAGCTGGCTCCGAATACTCAGTTGGATGTTTAATGGATTGTACAGTGCTGTGATCATTTTCTTCCTTTGCACTGGCGCACTTGAGCATCAGGCATTCAACTCCGATGGGAAACCTGCAGGGCGGGAAATTATGGGTGCGATGATGTACTCTTGTGTCGTTTGGGTTGTGAACTTGCAAATGGCGCTTGCTGTTAGCTACTTCACCTTGATACAACATCTTTTCATCTGGGGTTCCATTTCAATTTGGTACATTTTTCTCCTGATTTATGAGTCCATGACCCCCACCCTTTCAACCAATGCTTACAAGATCTTCACTGAAGTCCTTGCCCCTGGCCCTTCCTACTGGCTTGTCCTTTTCTTTGTGGTGATCTCAACACTCATTCCTTACTTCTCCTACTCAGCATTACAGATGAGGTTCTTTCCTATGTATCATCAAATGATTTTATGGATTAGAAATGAAGGGCAACTAGACAACCAGGAGTACTGTAATATGTTGTGGAAGTACAAATTCCGATCGACGAGTGTAGGTTCCACAGCACGGTTAGAAGCCAAAAGGAACAACTCAAAACAAAGAAACCAGACTTCTACTTGA 3588 41.81 MSGGRRRKLHFSKIYSFACGKASLKDDHSQIGGPGFSRVVFCNEAECIEAEIRNYVDNHVSTTKYTLATFLPKSLFEQFRRVANFFFLVTGILAFTPLAPYTAVSAILPLIIVISATMIKEGIEDWRRKKQDIQVNTRKVKVHQGNGVFAHTEWKTLRVGNVVRVEKDEFFPADIILLSSSYEDAICYVETMNLDGETNLKLKQALEVTSRMNEDSIFKSFKAIIKCEDPNANLYSFVGSMELEEQQYPLSPQQLLLRDSKLRNTDYIYGVVVFTGRDTKVFQNSTDPPSKRSKVERKMDQIIYFLFGLLFLLALIGSIFFGFVTGDDLNNGKMKRWYLRPDDAEVFYDSKRAPLAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDINMYYEEANKPARARTSNLNEELGQVDTVLSDKTGTLTCNSMEFIKCSVAGTAYGRGFTEVERAIGGLKNSPLYEAVNGGNQQEDDTKKTSHVKGFNFQDDRVMNGNWVYEPNANVIQMFFRLLATCHTAIPEINEHSGEVSYEAESPDEAAFVIAARELGFEFYKRTQTSISLHEFEPSLGKKVDRTYKLLHVLEFNSMRKRMSVIIRNEEGKIILFCKGADSVMFERLGKNGREFEERTKEHVSEYADAGLRTLILAYRELDEEEYREFHHKFTMAKTSVDADRESLIDKLTDKIEKNLILLGATAVEDKLQNGVPECIDRLAQAGIKIWVLTGDKMETAINIGFACSLLREDMKQIVITLESSEIQAIEKSGDKTSIIKASRQCVRDQITRGRAQINSSSGSSEAFALIIDGKSLSYALEDSMKASFLDLTIRCASVICCRSSPKQKALVTRLVKTGTRKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDVAIAQFKYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTIFLYEAFTSFSGEPVYNDWFLSLYNVFFSSLPVVALGVFDQDVSARLCLQFPLLYQQGVQNVHFSWLRILSWMFNGLYSAVIIFFLCTGALEHQAFNSDGKPAGREIMGAMMYSCVVWVVNLQMALAVSYFTLIQHLFIWGSISIWYIFLLIYESMTPTLSTNAYKIFTEVLAPGPSYWLVLFFVVISTLIPYFSYSALQMRFFPMYHQMILWIRNEGQLDNQEYCNMLWKYKFRSTSVGSTARLEAKRNNSKQRNQTST 1195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8794419 8802229 + CmaCh18G010610.1 Cma18g01061 314399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01061 1195 Gene3D - 544 674 IPR023299 GO:0000166
Cma18g01061 1195 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Cma18g01061 1195 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 55 1146 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cma18g01061 1195 SFLD C1.7: P-type atpase like 408 913 - -
Cma18g01061 1195 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1188 - -
Cma18g01061 1195 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1188 - -
Cma18g01061 1195 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 497 699 IPR023299 GO:0000166
Cma18g01061 1195 Pfam Phospholipid-translocating P-type ATPase C-terminal 890 1140 IPR032630 -
Cma18g01061 1195 Pfam Cation transport ATPase (P-type) 529 625 - -
Cma18g01061 1195 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 834 944 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma18g01061 1195 SUPERFAMILY HAD-like 419 917 IPR036412 -
Cma18g01061 1195 Pfam Phospholipid-translocating ATPase N-terminal 41 106 IPR032631 -
Cma18g01061 1195 Gene3D - 694 902 IPR023214 -
Cma18g01061 1195 SUPERFAMILY Calcium ATPase, transduction domain A 142 283 IPR008250 -
Cma18g01061 1195 SFLD p-type atpase 408 913 IPR044492 -
Cma18g01061 1195 SUPERFAMILY Calcium ATPase, transmembrane domain M 52 1140 IPR023298 -
Cma18g01061 1195 Gene3D - 115 286 - -
Cma18g01061 1195 CDD P-type_ATPase_APLT_Dnf-like 57 1022 - -
Cma18g01061 1195 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Cma18g01061 1195 PRINTS P-type cation-transporting ATPase superfamily signature 862 881 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma15g01422 Cma18g01061 CCT
Cma15g01422 Cma18g01061 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00969 Cma-Chr4:4960347 Cma18g01061 Cma-Chr18:8794419 0 dispersed
Cma15g01422 Cma-Chr15:8999195 Cma18g01061 Cma-Chr18:8794419 0 dispersed
Cma18g00030 Cma-Chr18:123057 Cma18g01061 Cma-Chr18:8794419 0 dispersed
Cma13g01049 Cma-Chr13:7987560 Cma18g01061 Cma-Chr18:8794419 0 wgd
Cma18g01061 Cma-Chr18:8794419 Cma04g01553 Cma-Chr4:7868099 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01061 K01530 - csv:101207148 2100.09