Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01062 ATGGCGGCCGTATCACCGGCGCCTAATTCATCTCCGTCGCCGGCTTCTCCCTCCACTCCATCTACTCCGCCGCCCAGTACTCCGTCACCGTTGCCACCGCAACCTCCTTCTCCGCCGCCGCTACAATCGCCTCCTCCGGATCCTTCTGGCCCCTCAACTCCTACTCCGTCCCCATCAGGCCAGTCATCTCCTCCTCCTCCACCGTCTCGTCAACCATCTGCTACTTCACCGCCACCTGCTTCTGGAACTCCGCCCCCTGTAACACCCGCATTGTCTCCTCCGCCGCCTCGGCCTGTTCCGCCGGCAACTCCACCACCAACTCCGTCCAGTGCTCCACCCCCGTTAACACTGGATCCCATACCACCATCAGCAACCCCACCAGTAAGCTCCCCTCCACCAACGTCATCTAATCCCCCACCACCAAATTCACCTCCACCTCCTGTAGCAGAGCCTCCTCAAACCCCTCCTCCACAGTCATCAAACCCTCCTCAACTCTCATCTCCGCCACCTCTGCCACCACCACCACAAGAAAACCCCTCGGATAATCCATCGCCGCCGCCCACAGCCCCAGTTGAGAATCCTCCCCCAACACCACCATCAGCACCTCCAGAAACTTCACCTCAACCCCCAGCGTCAATACCTCCTAGAAACTCACCTCCACCTCAAAGGCTCACTTCTCCTCCTCCTCCCAGTGATCCCCCAGCTTCAAGTCCTCCCCCTCCCAGTGACCCCCCAGCTTCAAGTCCTCCCAAGCCATCGCCGCCCGCATCAATTTCGCCTCCTCCACCATCCCTTGTTTCTCCTCCAGTATCGTCTAAAACCCCAACATTGCCGCCAGGAAATCCCACGGATGATGGTTCGGGTCCTAATGGCGGAGTAAACTCGAATTCGAACAGCAATGGAGGAATAAATACTGGGGGTGTGATTGCAATTGGTGTAGTGGCTGGAATTGTAGTGCTTGCCATAGTTGGTTTTGTTGTATGGTACATCAGGAAGCCAAGAAAAAATGATTCTGGTCGTGGGGGTTACATTATACCATCTTCTATGGGCTCCTCACCCAAGTCAGAATCCCTTATGAAGGTCCATTCCACACTTCACCAAGACAGACATGGTGGTGGAACATTCTCTCCAAAAGAGTTTGGTGGGTTGGGCAATTCAAGGTCATTCTTTACATATGAAGAACTTTTCAAAGCAACAAATGCATTTTCTGCTCAGAATCTTTTGGGAGAAGGTGGATTTGGTTCTGTTTATAAAGGATATCTACCAGATGGAAGAGAGGTTGCAGTGAAGGAGCTAAAGATTGGTGGTGGTCAGGGTGAGCAGGAATTCAAAGCTGAAGTCGAGATAATTGGTCGCGTACACCACCGCCATTTGGTTTCTCTTGTGGGCTACTGCATTTCAGAGCATCAGAGGTTGCTGGTTTATGATTATGTGTGTAACAATTCCCTTTACTACCATCTTCATGTTAAAGGGGACGACCAGCTCGTTCTGGACTGGGCAAGACGCATTAAGATTGCAGCTGGGGCAGCCCGGGGAATAGCTTATCTTCATGAAGACTGCCATCCTCGAATTATCCACCGTGATATCAAATCTTCAAACATTCTTCTAGATGAAAATTTTGAAGCTCGGGTTTCAGACTTCGGGCTGGCTAAATTAGCTCTTGATGCACAGACTCATATAACCACTCGTGTCGTGGGAACTTTCGGATATGTTGCCCCTGAATATGCATCGAGTGGGAAGTTAACTGAGAGATCAGATGTATATTCTTTTGGAGTCGTACTTCTCGAGCTGATTACTGGTCGAAAGGCCGTTGATGCATCCCAACCGATGGGGGACGAGAGCCTTGTTGAATGGGGTCGGCCTTTACTAAACCATGCGCTCCACAGCCAAGATTTTGAAAGGTTGGTGGACCCAAGGCTTGAAAGGAACTATGTTGAGAGTGAAATGTTGAAGATGATAGGAATAGCTGCTGCTTGTGTTCGGCATGCGTCCGCAAAGAGACCACAGATGGGACAGGTTGTTCGAGCTTTTGATAGTTTAGCTGCAACAGATTTAAGTAATGGAATGAGATTCGGGGAGAGTCAAGCCTTCGACTCCGGTCAAAAGTCTGCTGAGATAAGGTTTTTCCGAATGCTGGCATTTGGAAACCAAGATTACAGCTCAGACTTTTATAGCCAAGGTAGCTCAAATGCCTGA 2196 50.82 MAAVSPAPNSSPSPASPSTPSTPPPSTPSPLPPQPPSPPPLQSPPPDPSGPSTPTPSPSGQSSPPPPPSRQPSATSPPPASGTPPPVTPALSPPPPRPVPPATPPPTPSSAPPPLTLDPIPPSATPPVSSPPPTSSNPPPPNSPPPPVAEPPQTPPPQSSNPPQLSSPPPLPPPPQENPSDNPSPPPTAPVENPPPTPPSAPPETSPQPPASIPPRNSPPPQRLTSPPPPSDPPASSPPPPSDPPASSPPKPSPPASISPPPPSLVSPPVSSKTPTLPPGNPTDDGSGPNGGVNSNSNSNGGINTGGVIAIGVVAGIVVLAIVGFVVWYIRKPRKNDSGRGGYIIPSSMGSSPKSESLMKVHSTLHQDRHGGGTFSPKEFGGLGNSRSFFTYEELFKATNAFSAQNLLGEGGFGSVYKGYLPDGREVAVKELKIGGGQGEQEFKAEVEIIGRVHHRHLVSLVGYCISEHQRLLVYDYVCNNSLYYHLHVKGDDQLVLDWARRIKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDENFEARVSDFGLAKLALDAQTHITTRVVGTFGYVAPEYASSGKLTERSDVYSFGVVLLELITGRKAVDASQPMGDESLVEWGRPLLNHALHSQDFERLVDPRLERNYVESEMLKMIGIAAACVRHASAKRPQMGQVVRAFDSLAATDLSNGMRFGESQAFDSGQKSAEIRFFRMLAFGNQDYSSDFYSQGSSNA 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8802449 8806549 - CmaCh18G010620.1 Cma18g01062 314400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01062 731 MobiDBLite consensus disorder prediction 1 298 - -
Cma18g01062 731 SMART serkin_6 402 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01062 731 CDD STKc_IRAK 408 680 - -
Cma18g01062 731 MobiDBLite consensus disorder prediction 277 298 - -
Cma18g01062 731 Gene3D Transferase(Phosphotransferase) domain 1 479 694 - -
Cma18g01062 731 MobiDBLite consensus disorder prediction 10 276 - -
Cma18g01062 731 ProSitePatterns Protein kinases ATP-binding region signature. 408 430 IPR017441 GO:0005524
Cma18g01062 731 ProSitePatterns Serine/Threonine protein kinases active-site signature. 524 536 IPR008271 GO:0004672|GO:0006468
Cma18g01062 731 PRINTS Proline rich extensin signature 12 33 - -
Cma18g01062 731 PRINTS Proline rich extensin signature 33 49 - -
Cma18g01062 731 PRINTS Proline rich extensin signature 55 72 - -
Cma18g01062 731 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 134 724 - -
Cma18g01062 731 Pfam Protein tyrosine and serine/threonine kinase 405 675 IPR001245 GO:0004672|GO:0006468
Cma18g01062 731 SUPERFAMILY Protein kinase-like (PK-like) 385 675 IPR011009 -
Cma18g01062 731 ProSiteProfiles Protein kinase domain profile. 402 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01062 731 Gene3D Phosphorylase Kinase; domain 1 377 477 - -
Cma18g01062 731 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 134 724 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma15g00997 Cma18g01062 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00798 Cma-Chr18:7019254 Cma18g01062 Cma-Chr18:8802449 1.94E-155 dispersed
Cma18g01062 Cma-Chr18:8802449 Cma04g00778 Cma-Chr4:3963160 3.57E-126 dispersed
Cma15g00198 Cma-Chr15:963133 Cma18g01062 Cma-Chr18:8802449 0 wgd
Cma18g01062 Cma-Chr18:8802449 Cma04g01554 Cma-Chr4:7874847 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69311 PF07714 PK_Tyr_Ser-Thr 1.60E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01062 - - cmo:103489228 732.25