Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01066 ATGTGCCTACAAATCCCCATCAAGGAAGCAGCTGCCATGGGAGACAGAGGAAAGGCTCTGGAAGTTTACAGCAACGACATGGACTTCTATTCAATTGCTTCTGAATTCCTCTGTAAGAAACACATTTCCTCTTCCTCTGTTGGAGTATGTGCTGATTGCTTGAAAGATCGGTTGATCAAACTGGTTTGTTCTGATTGTGGCGAGCAGAGGCTCTCCTCTTGCTCCTGCTCTGAAATCTCATCTAATCGAAATTCTTGTACGTTGGAAGTAGGAAGTGTTGGGAGAGTTTCGTTTTTGATAGAGAATGAGAGAAATGGCGTTTCTTTGTTGGGTTTGATGAAGCCCAAGATTAAGAAAAGGGAGGAGGTTGTGCTGCTAGAGAGAAGCAGTAGTAGCTGTGTGGAGATTAAGAAAAGTGGGTTTTGGAGGATCGGGAAATTTTTCAGGAAGAAGAGGGAGAAGGGATCTGGGTTTGATGAAAAGAGTGATATTTGTATGGTTGATTACATGGGTGTGTCCAGGTCTAGATCTCTCTGTAGTTTTCGTGGTGGTGGGTTTCTCGGGTCGGAGGACGGCGGAGACATGGTGGTTTCCGGTGGCCGGAGCTCGATTTCTGGTGCTAGAACTTCGAGTGTCAATGGAGGACTCGTCTGTGATTCCGCTAGAAGAAGTGGATTCAGCGAAACAGAGCCAAGAAAAAGTGGTTTTGAGAGTGATCACAGAGAATGTGGGAATTACGAAAGCGATCATAATGGGTTTAGTTTAGCAAACAGGCGTGTTTTCTCTCTAAAAGAGAGCGATTTTAATGGAACGGACGAATCTGGGTTCATAGATTTCAAGCTGGATTTCACCTCAGAAACAAAGCCAGAGTACTCTGTTCCCAAAACAGGCATCGGAGCCGGAGGAGGATTGGGTTTGGGCGCTCTCTCAAACCCCAACTCTTCATTTAGAAGCACGAGAGGTTTTGACACGGCGGCAGCGGCGGCGCATGAATGCAGCAGAGGGCTGTCCAATGGCGGCGGAGGCTCCTGCAGGATAACAGTTAGTGACAGAGGGATAAAGAAGGGGAGGAAAAGCTTGAAAGCATTGAAATGGCTATTCAAGCATTCACCAAACTGGGCAAACGCAACTCCGAGGAAGAAGGAAGAAGATTTGATATCTCAAGCTTGA 1170 46.58 MCLQIPIKEAAAMGDRGKALEVYSNDMDFYSIASEFLCKKHISSSSVGVCADCLKDRLIKLVCSDCGEQRLSSCSCSEISSNRNSCTLEVGSVGRVSFLIENERNGVSLLGLMKPKIKKREEVVLLERSSSSCVEIKKSGFWRIGKFFRKKREKGSGFDEKSDICMVDYMGVSRSRSLCSFRGGGFLGSEDGGDMVVSGGRSSISGARTSSVNGGLVCDSARRSGFSETEPRKSGFESDHRECGNYESDHNGFSLANRRVFSLKESDFNGTDESGFIDFKLDFTSETKPEYSVPKTGIGAGGGLGLGALSNPNSSFRSTRGFDTAAAAAHECSRGLSNGGGGSCRITVSDRGIKKGRKSLKALKWLFKHSPNWANATPRKKEEDLISQA 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8848329 8849906 - CmaCh18G010660.1 Cma18g01066 314404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01066 389 PANTHER OS04G0591300 PROTEIN 13 384 - -
Cma18g01066 389 PANTHER BNACNNG49610D PROTEIN 13 384 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01066 - - - csv:101207638 621.313
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01066 Cma-Chr18:8848329 Cma04g01556 Cma-Chr4:7914922 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g204 . . Bda01g02107 . . . . . Cmo04g01630 Cmo18g01087 . Cma18g01066 Car04g01609 Car18g00988 Sed06g1837 . Cpe01g01384 Bhi07g01401 Tan04g0930 Cmetu10g0942 Lac13g0432 Hepe10g1846 . . . . . . . . . Cone13ag0878 . . . Lsi04g00317 Csa05g02553 Chy10g01092 Cme10g00318 . . . . . Bpe02g02296 Bma01g00144 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011251 1 1 0 1 1 1 2 1 1 0 0 1 2 1 1 2 1 1 2 1 1 1 0 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01066 Cma_Chr18 FPKM 4.11039 4.663455 6.03247 6.028707 5.181141 4.678977 6.378746 1.616324 1.072275 1.251686