Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01070 ATGACTCTAATGGGAATTAGAACAGAGCTTCCCCTGTTCTTCTTGTTTTGCTTATGGTGTTCTTCTGTAAATGGGTTGCTTACTGCAAAAGGTGTCAACTTTGAAGTGCAAGCCCTCATGGCCATCAAAGCTGCTCTGAAAGACCCACATTCTGTTCTTAATTGGGATGAAAACGCTGTGGATCCATGTAGCTGGAGCATGATTACTTGTTCACCGGAGAAATTCGTCATTAGCTTAGGAGCTCCTAGTCAGAACTTGTCGGGTAGCCTGTCGCCGAGCATTGGAAACTTGACCAATCTTCAGTCTGTGCTTCTACAGGACAACAATATATCAGGAACAATCCCAATGGAGCTTGGGAACATACCAAGTCTTGACACTCTTGATCTTTCAAGCAATGGCTTCCATGGAGAAATTCCCATTTCTCTTTCAAATCTCAAGAGTTTGCAGTATCTGAGGTTAAACAACAACAGTCTTTCTGGGGCTATTCCTTCATCTTTAGCCAATATGACTCAGCTGGCATTGCTAGACCTGTCTTTTAACAATCTCAGTGGCCCATTGCCCAGATTGCAAGCCAAAACCTACAACCTTGCTGGGAATTCGTTCATTTGCTCATCTGGGTCGGAGCTTAGCTGCAACGGAACAGCTCCACCGCTCTTATTTGCAGTCAATACGCCTCAAAATCCACAGCCTTTAGGGCGATCCAAGGGCCACAAATTAGCCTTAGCTTTCGGCTCAAGCCTTGGCTGTGTTTTTCTGCTAACTATTGGGTTTGGCTTCTTTATTTGGTGGAGGCAACGACACAACCAGCAGATATTCTTCGATGTAAATGACCAAAGATTTGAAGAAGTGTGCCTTGGGAACCTAAGGATTTTCCAGTTCAGAGATTTACAAGCTGCTACAAACAACTTCAGCAGCAAAAACTTGGTGGGAAAAGGTGGGTTTGGGAATGTATACAAAGGGTACCTTCAAGATGGTACAGTTATAGCTGTGAAGAGACTAAAAGATGGAAATGCCATGAGAGGAGACGTACAATTCCATACTGAAGTTGAGATGATCAGCCTAGCCGTGCACCGGAACCTCCTCCGTCTCTACGGGTTCTGCATGACAACCACGGAGCGACTGCTGGTTTACCCCTATATGTCGAACGGCAGTGTTGCATCACGTCTCAAAGCGAAGCCAGCTCTGGATTGGAGTACAAGGAAAGGAATAGCGTTGGGTGCAGCTAGAGGCTTACTGTATTTGCATGAGCAGTGTGATCCTAAGATCATACACAGAGACGTCAAGGCTGCAAATATATTGCTTGATGATTACTGCGAGGCTGTGGTTGGAGATTTTGGACTGGCAAAGCTGTTGGATCACAGAGATTCACATGTGACAACTGCTGTACGAGGAACGGTTGGTCATATAGCTCCCGAGTATCTCTCGACGGGTCAATCCTCTGAGAAAACTGATGTCTTCGGATTTGGAATCCTTCTTCTTGAGCTGATCACTGGACAGAGAGCTCTTGAATTTGGAAAAGCTGCAAATCAGAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCACCAAGAAAAGAAGCTGGAAATACTAGTTGACAAGGATCTAAGGAACAATTACGACCTGATCGAGCTCGAAGAAATGGTTCAAGTAGCTCTCTTATGTACACAGTATCTTCCAACCACCAGACCTAAGATGTCTGAAGTGGTTAGAATGCTTGAAGGGGATGGACTTGCCGAAAAATGGGAAGCTTCTCAGAGAGCAGAAGCAAACAGGATCAGAGTCAACGAGTTCTCCTCTTCCGAGCGATATTCTGATCTTACAGATGACTCTTCCTTGCTTGTACAAGCCATGGAGCTTTCTGGACCAAGATGA 1872 45.09 MTLMGIRTELPLFFLFCLWCSSVNGLLTAKGVNFEVQALMAIKAALKDPHSVLNWDENAVDPCSWSMITCSPEKFVISLGAPSQNLSGSLSPSIGNLTNLQSVLLQDNNISGTIPMELGNIPSLDTLDLSSNGFHGEIPISLSNLKSLQYLRLNNNSLSGAIPSSLANMTQLALLDLSFNNLSGPLPRLQAKTYNLAGNSFICSSGSELSCNGTAPPLLFAVNTPQNPQPLGRSKGHKLALAFGSSLGCVFLLTIGFGFFIWWRQRHNQQIFFDVNDQRFEEVCLGNLRIFQFRDLQAATNNFSSKNLVGKGGFGNVYKGYLQDGTVIAVKRLKDGNAMRGDVQFHTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKAKPALDWSTRKGIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLEILVDKDLRNNYDLIELEEMVQVALLCTQYLPTTRPKMSEVVRMLEGDGLAEKWEASQRAEANRIRVNEFSSSERYSDLTDDSSLLVQAMELSGPR 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8860581 8864597 + CmaCh18G010700.1 Cma18g01070 314408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01070 623 Pfam Leucine rich repeat 122 182 IPR001611 GO:0005515
Cma18g01070 623 SUPERFAMILY L domain-like 35 202 - -
Cma18g01070 623 SMART serkin_6 303 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01070 623 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Cma18g01070 623 ProSiteProfiles Protein kinase domain profile. 303 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01070 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 623 - -
Cma18g01070 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Cma18g01070 623 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 14 623 - -
Cma18g01070 623 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Cma18g01070 623 SUPERFAMILY Protein kinase-like (PK-like) 281 573 IPR011009 -
Cma18g01070 623 Pfam Protein kinase domain 304 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01070 623 Gene3D Ribonuclease Inhibitor 32 213 IPR032675 -
Cma18g01070 623 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Cma18g01070 623 Gene3D Transferase(Phosphotransferase) domain 1 380 592 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02831 Cma-Chr4:18924345 Cma18g01070 Cma-Chr18:8860581 0 dispersed
Cma05g00027 Cma-Chr5:126553 Cma18g01070 Cma-Chr18:8860581 0 dispersed
Cma12g00024 Cma-Chr12:93850 Cma18g01070 Cma-Chr18:8860581 0 dispersed
Cma04g02193 Cma-Chr4:15292397 Cma18g01070 Cma-Chr18:8860581 0 transposed
Cma15g00205 Cma-Chr15:1002463 Cma18g01070 Cma-Chr18:8860581 0 wgd
Cma18g01070 Cma-Chr18:8860581 Cma04g01560 Cma-Chr4:7925882 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69312 PF00069 Pkinase 2.60E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01070 - - cmos:111449699 1214.13