Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01071 ATGGGTGACATTTTGGAGGTGGATCATTTGAGCGATCTGCCTCAGAGCATTATAGAATGCATTCTAACTAGGTTACCGATTAGAGATGCCATAAGAACAAGTATTTTATCTAGGAGATGGAGATACAAATGGACCACTCTAACTCAACTTGTGTTTGATGATGATTGTGTTGCCGTGTCCAACGATGGAATGTATGAAGACCTTATATATTTTATCACTCATGTTCTTTTTCTTCACGAAGGTCCAATTCATAAGTTCCATCTTTCTGCTACCTACTTACAGAATACTCCAGATTTAGATCAGTGGATGCTTTTCCTTTCAAGGAAGGGCGTCAGGGAATTGATTATTGAATTGGGAGATGGCGAGTGGTTTCGGGTGCATTCTTGTCTTTTTAACTGTACCAAATTGACCCTATTGGAGCTGTATCGTTGTGAATTGGATCCTCCTCCTACTTTTAGGGGATTCTTATGTTTGAAGAGCCTAAAACTTCATCAAGTTCTAATTGCACCCGAAGACATTGAAAGTCTTATTTCTAATTGTCCACTCTTGGAGAGTCTGGCGCTGTCGTACTTCGATAGTCTAGTGCTTAATATCTTTGCTCCAAATCTCAAGTACCTCTATCTTGAAGGCGAGTTCAGAGACATATATCTTCAAAACACACCACTCTTGGTTGCAATTTCGGTTGCGTTATATATGAATGATGATACCGAGCCCTTTGGCGATATTTCTGATTGCAATTTTGAGAAATTTCTTGGTGGGGTGCCTTATCTTGAGAAACTTACAGGGCATATTTATTTCACGAAGTATCTGAGTATAGGTAATAGCGCAAGAGCTCTACCGGTGTCCTATATCTATTTAAGGAGTATTGAACTGCACCAAGTCAGTTTTGAAGATATGAATGAAATACTCGTTGTGCTTCGCTTGATTACCAGCTCTCCAAATTTGGAGGAGCTTCAAATTTCGGGCTCCTCAAACTCTGTGGCTGCTTCAGAAGCACCTGACTTGGACTTTTGGGAGAATGAATGTCCTTGGAACTGTACATTTGGTAACCTTAAAGTTGTGAAAATGACAGATATGTCTGGTGTACCACATGAGATGGAATTTATTAAATATTTGCTTAGAAATTCTCTGATTCTTGAAACAATGAGTATCAGACCATGTGTCTATGTTACGGACCGGCGATTGAATATGTTGATTGAATTGTTGAAATTTAGGAGAGCTTCATCTGAAGCAGAAATTTTATTCATTTAA 1251 38.93 MGDILEVDHLSDLPQSIIECILTRLPIRDAIRTSILSRRWRYKWTTLTQLVFDDDCVAVSNDGMYEDLIYFITHVLFLHEGPIHKFHLSATYLQNTPDLDQWMLFLSRKGVRELIIELGDGEWFRVHSCLFNCTKLTLLELYRCELDPPPTFRGFLCLKSLKLHQVLIAPEDIESLISNCPLLESLALSYFDSLVLNIFAPNLKYLYLEGEFRDIYLQNTPLLVAISVALYMNDDTEPFGDISDCNFEKFLGGVPYLEKLTGHIYFTKYLSIGNSARALPVSYIYLRSIELHQVSFEDMNEILVVLRLITSSPNLEELQISGSSNSVAASEAPDLDFWENECPWNCTFGNLKVVKMTDMSGVPHEMEFIKYLLRNSLILETMSIRPCVYVTDRRLNMLIELLKFRRASSEAEILFI 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8863158 8867056 - CmaCh18G010710.1 Cma18g01071 314409

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01071 416 ProSiteProfiles F-box domain profile. 7 68 IPR001810 GO:0005515
Cma18g01071 416 SUPERFAMILY F-box domain 7 81 IPR036047 GO:0005515
Cma18g01071 416 Pfam FBD 344 384 IPR006566 -
Cma18g01071 416 PANTHER - 7 390 - -
Cma18g01071 416 Gene3D Ribonuclease Inhibitor 87 408 IPR032675 -
Cma18g01071 416 SUPERFAMILY RNI-like 123 374 - -
Cma18g01071 416 Pfam F-box domain 10 42 IPR001810 GO:0005515
Cma18g01071 416 Gene3D - 2 46 - -
Cma18g01071 416 PANTHER F-BOX PROTEIN-LIKE 7 390 - -
Cma18g01071 416 SMART 9598neu4hmm 345 416 IPR006566 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01071 - - - csv:101208370 788.875
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01559 Cma-Chr4:7925487 Cma18g01071 Cma-Chr18:8863158 0 dispersed
Cma05g00720 Cma-Chr5:3867253 Cma18g01071 Cma-Chr18:8863158 1.04E-14 dispersed
Cma07g00855 Cma-Chr7:3989569 Cma18g01071 Cma-Chr18:8863158 6.52E-09 dispersed
Cma14g01278 Cma-Chr14:10112646 Cma18g01071 Cma-Chr18:8863158 1.06E-07 dispersed
Cma18g01071 Cma-Chr18:8863158 Cma14g01280 Cma-Chr14:10126043 2.33E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1027 . . . . . . . . Cmo04g01632 . . Cma18g01071 Car04g01613 . . . Cpe01g01386 . . . . . . . Cla05g02358 Cam05g2527 Cec05g2554 Cco05g2595 Clacu05g2522 Cmu05g2384 Cre05g2499 . . . Cone9ag0506 . . . . . Blo11g00816 Bda07g01512 . Bpe11g01675 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007651 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01071 Cma_Chr18 FPKM 4.165709 4.124776 4.802103 4.932305 2.534427 1.765265 2.39593 3.437549 2.968424 4.321515