Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01072 ATGGGTATCTCAAATCTCTCCCCTTGCCTCGTTTATGGGCTGATGGGGCTTTGTGCTTTCTTGTCTGTGAGCCACAGCTTGACGTTGGATTACTATGCCAAAACTTGTCCCACTGTGTTGCAGGTTGTGAGGAAAGAGATGGAGTGTGCAGTGCTTTCTGACCCACGCAATGCAGCTTTTGTTGTCCGCTTGCACTTCCATGACTGCTTTGTTCAGGGGTGTGACGGGTCGGTTCTGCTGGACGACACGATAACGTTGCAGGGAGAGAAAAAGGCTTCCACCAACATTCACTCCTTGAAAGGCTTTAGAATCATTGACAGGATAAAGAATAGCCTTGAATCTGAATGTCCAGGGATTGTTTCTTGTGCAGACATACTCACTATTGCAGCCAGGGATGCAGTGATTCTGGTGGGCGGTCCTTACTGGGAGATTCCTCTTGGAAGAATGGATTCCACAACTGCGGGTTATGAACTAGCAGACGCAAATCTTCCCTCTGCCAATGAGGGACTTCTGAGTATCATCTCCAAGTTTCTTTATCAGGGTCTCTCTGTCACTGACATGGTAGCTCTATCAGGAGCGCACACGATCGGGATGGCAAGGTGCGAGAATTTCAGGGAAAGGATTTACGGGGATTTTGAAGCAACTTCCAACGACGGTAACAACCCGATCTCGAAGTCGTATCTTGACAAGTTGAGATCCATCTGCCCCCCAGTTGGTAAAGCTGCAGAGAACAACATAACAGCAATGGACAATGTGACACCAGAGGTGTTTGACAACTCCTATTTCCACATGCTGATGAGAGAAGAAGGGCTTATGAATTCAGACCAGGAACTGTATTCAAGCCTTCTTGGCATGGAAACAAGAGCACTGGTTAAGAAATATGCTGCTGAACCACTTGCTTTCTTTCAGCAATTCTCTGATTCCATGGTGAAGTTGGGGAATATCACTAACTATGATAGCTATTTCACTGGGGAAGTTAGAACAAACTGCAGATTCTCTGGAATTCGCACTTCCCAAAACTCAAATAAAGGAGAAAGAAGAAACCAGAGGCAAAGGGAATCACTATATAACCGACCTTACAATGATGGAAATGGGCAGCCATCTAAGCTGCGGCTGTGCTCATTTGTGACCCATTGTGATCACAAAACTCCCTCTCAATCGCAGCTCAGTTTAATGGCTCAAGATCATTCTGGTTCTGAATCTCATCAGAAACGGGCAGGTCTATTGAAAGATCAAGTGAGATTGGTTAAGAGAAAGGATTCGGATCGCTATGAAATTGTTTCAATCCAAGATCCTTTGTCATTTGAGAAAGGGTTCTTCATAGTTATTCGTGCCTGCCAGCTGCTAGCACAGAAGAATGAAGGAATAATATTGGTTGGTTTAGCTGGTCCTTCTGGGGCTGGAAAAACAGTTTTCACAGAAAAGATAATGAACTTTATGCCCAGTATTGCTATCATATCAATGGATGATTATAATGATGCAAGTCGAATTGTCGATGGCAACTTTGATGATCCACGCTTAACTGACTACGACACTTTGCTCCAGAATGTCCAAGATCTAAAAGCAGGGAAGCAAGTTCAAGTCCCTATTTATGATTTCAAATCTAGTTCCAGAATTGGATACAGGACAGTTGAGGCTCCAAGCTCAAGGATTGTGATCATCGAGGGAATTTATGCATTAAATGAAAGATTGCGGCCCCTGTTGGACCTTCGAGTTTCTGTTAGAGGTGGAGTTCACTTTGACCTTGTGAAACGGGTGTTACGTGACATCCAACGTGCTGGCCAAGAACCAGAAGAAATTATTCATCAAATTTCTGAAACAGTGTATCCAATGTACAAGGCTTTTATTGAACCAGATCTTGAAACTGCGCATATAAAAATCATCAACAAATTCAATCCCTTTACAGGATTTCAAAGTCCCACTTACATATTGAAGTCAGCAAGAAAGATAACAGTGGATCAAATTAAGTCTGTATTATCTGAAGATCATACAGAAAATTTGGAGCAGACATACGACATATATCTGTTGCCACCAGGTGAAGATCCCGAGTCTTGTCAATCGTATCTAAGGATGCGCAACAAAGAAGGAAAATACAGTCTCATGTTTGAGGAATGGGTTACCGACAATCCATTTATCATATCTCCGAGAATAACTTTCGAGGTCAGTGTGCGCCTTCTTGGTGGACTGATGGCCTTAGGATACACAATAGCAACAATTCTTAAAAGAAAGAGCCATGTATTCTCAGATCACAGAGTGTGTGTCAAAATTGATTGGCTGGAACAATTAAATCGCCAGAACGTTCAGGTACAAGGTAAAGATCGGCTAGTCGTAAAACATGTAGCGGAGCAGCTTGGCTTGGATGGTTCCTACATTCCTCGTACCTACATTGAACAGATTCAACTGGAGAAGCTTGTAAATGAAGTCATGGCCTTGCCAGATGATTTGAAGTCTAAACTCAGTCTTGACGAGGATCTAGTTTCAAGCCCCATTGAAGCACTCTCTAGAGCCTCTGCTGATAGAGTTTCCTTGAGAAATAGAAATCTCAAAAGTGGCATATCTCAGTCATATACAACCCAAAGGGAGAAAAATCTGACTGGATATGCTTCCAACAACCAAAGATTTGTCGACAGCAACACGGAGTCTTCGGCAATGCTTGCGAACCAGGGAGCCATTACTCAGCTTTCTGAACAAATTTCATCACTCAATGATCGAATGGACGAGTTTACAACTCGAATCGAGGAGTTGAATTCAAAGTTGAGCTTCAAGACGAATTCTCCAAGCCACCACAACCTGAATCTCCAAGCGGAAACATGCAACGGTTCTGTGCCGACTTCTTGTTTCGTCTCTGGATTGGGTAATGGCTCCTTGACTGGTTGCATTATACCCAATTCTTCATCCTTCTCCCAGTTGGCCAAGGATTCTCCTTTAATGGATGAGATATCAGGAATCGTGAGGGGGCAACGACAAGTTATGCACCAATTAGATTGCCTTAGCAATCTTCTTCGGGAACGTGATAGCGCGGGGGAACGATCCCGTCAAGTAAGAACAAAGAAGAAAACCATAATACCTGATCCCGAGCCGCTAAGACTTCCTCTCTTGTTGACTGTAGCTGTGGGAGGTGTAGGAATTTTGTTGTACAAGAGCTTAAGTCGTAATTGA 3159 43.53 MGISNLSPCLVYGLMGLCAFLSVSHSLTLDYYAKTCPTVLQVVRKEMECAVLSDPRNAAFVVRLHFHDCFVQGCDGSVLLDDTITLQGEKKASTNIHSLKGFRIIDRIKNSLESECPGIVSCADILTIAARDAVILVGGPYWEIPLGRMDSTTAGYELADANLPSANEGLLSIISKFLYQGLSVTDMVALSGAHTIGMARCENFRERIYGDFEATSNDGNNPISKSYLDKLRSICPPVGKAAENNITAMDNVTPEVFDNSYFHMLMREEGLMNSDQELYSSLLGMETRALVKKYAAEPLAFFQQFSDSMVKLGNITNYDSYFTGEVRTNCRFSGIRTSQNSNKGERRNQRQRESLYNRPYNDGNGQPSKLRLCSFVTHCDHKTPSQSQLSLMAQDHSGSESHQKRAGLLKDQVRLVKRKDSDRYEIVSIQDPLSFEKGFFIVIRACQLLAQKNEGIILVGLAGPSGAGKTVFTEKIMNFMPSIAIISMDDYNDASRIVDGNFDDPRLTDYDTLLQNVQDLKAGKQVQVPIYDFKSSSRIGYRTVEAPSSRIVIIEGIYALNERLRPLLDLRVSVRGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLETAHIKIINKFNPFTGFQSPTYILKSARKITVDQIKSVLSEDHTENLEQTYDIYLLPPGEDPESCQSYLRMRNKEGKYSLMFEEWVTDNPFIISPRITFEVSVRLLGGLMALGYTIATILKRKSHVFSDHRVCVKIDWLEQLNRQNVQVQGKDRLVVKHVAEQLGLDGSYIPRTYIEQIQLEKLVNEVMALPDDLKSKLSLDEDLVSSPIEALSRASADRVSLRNRNLKSGISQSYTTQREKNLTGYASNNQRFVDSNTESSAMLANQGAITQLSEQISSLNDRMDEFTTRIEELNSKLSFKTNSPSHHNLNLQAETCNGSVPTSCFVSGLGNGSLTGCIIPNSSSFSQLAKDSPLMDEISGIVRGQRQVMHQLDCLSNLLRERDSAGERSRQVRTKKKTIIPDPEPLRLPLLLTVAVGGVGILLYKSLSRN 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8867931 8881802 - CmaCh18G010720.1 Cma18g01072 314410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01072 1052 PRINTS Plant peroxidase signature 307 320 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g01072 1052 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g01072 1052 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g01072 1052 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g01072 1052 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g01072 1052 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g01072 1052 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g01072 1052 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g01072 1052 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g01072 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 422 627 IPR027417 -
Cma18g01072 1052 PANTHER PHOSPHORIBULOKINASE/URIDINE KINASE-LIKE PROTEIN 389 1025 - -
Cma18g01072 1052 ProSiteProfiles CYTH domain profile. 643 801 IPR023577 -
Cma18g01072 1052 PANTHER URIDINE KINASE 389 1025 - -
Cma18g01072 1052 Gene3D Peroxidase, domain 2 164 312 - -
Cma18g01072 1052 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Cma18g01072 1052 Gene3D - 30 332 - -
Cma18g01072 1052 SUPERFAMILY Heme-dependent peroxidases 27 332 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma18g01072 1052 Gene3D - 457 659 IPR027417 -
Cma18g01072 1052 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g01072 1052 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g01072 1052 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g01072 1052 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g01072 1052 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g01072 1052 ProSiteProfiles Plant heme peroxidase family profile. 26 334 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g01072 1052 Pfam Peroxidase 43 296 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g01072 1052 Coils Coil 891 918 - -
Cma18g01072 1052 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Cma18g01072 1052 MobiDBLite consensus disorder prediction 333 365 - -
Cma18g01072 1052 Pfam CYTH domain 660 795 IPR023577 -
Cma18g01072 1052 SUPERFAMILY CYTH-like phosphatases 651 798 IPR033469 -
Cma18g01072 1052 CDD secretory_peroxidase 27 332 IPR033905 GO:0004601|GO:0042744
Cma18g01072 1052 CDD UMPK_like 458 630 - -
Cma18g01072 1052 Pfam Phosphoribulokinase / Uridine kinase family 459 627 IPR006083 GO:0005524|GO:0016301
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01493 Cma-Chr11:9822021 Cma18g01072 Cma-Chr18:8867931 1.82E-15 dispersed
Cma18g01072 Cma-Chr18:8867931 Cma03g00716 Cma-Chr3:5790882 1.37E-85 dispersed
Cma04g01562 Cma-Chr4:7939483 Cma18g01072 Cma-Chr18:8867931 0 transposed
Cma10g00269 Cma-Chr10:1195804 Cma18g01072 Cma-Chr18:8867931 0 wgd
Cma11g00239 Cma-Chr11:1218814 Cma18g01072 Cma-Chr18:8867931 0 wgd
Cma18g01072 Cma-Chr18:8867931 Cma04g01561 Cma-Chr4:7931748 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01072 K00876 - csv:101208611 1198.34