Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01074 ATGAAACCAGTGCCTATCAATATGAATGGAATGGTAGCCACTTGCCACCGCCAAGCCAGATTTTTGGTATGGTTATGCTTCACAGCCAAGGTGTTTGATGAAATGCTTCAGAGAAAGAGCTGCTGCAGCGATTTAGCTGAAATGACTGGCATCCAGTTTTTTCCATCTGAAAACGCTTTTCAAATTCCTTCAAATATTGGCATGATCCAGAACAGCTTTCAGACCTTCCATCATTTGAATGACTTTCTAGGAAACCAACCAATGTCTCACGTCCCTCATCCTGGCCTTGAATTCCTTGCACAATCCTTAAGTTTTAGCTACAACTCAACATCTGATGAAGCCGAGGAACAACAGAAAAGTATTATTGATGAGAGAAAGCAAAGGAGAATGATTTCTAATAGAGAATCAGCTCGTAGATCACGGATGAGAAAACAGAAACACCTTGATGAGCTTTGGTCTCAGGTGCTTAGGCTTCGCTCTGAGAACCATGAGCTGGTGGACAAGTTGAACCACATATCTGATTGCCACGAAAAGCTTCTTCTGGAGAATGCCAAGCTGAAGGAGGAAGCCTCTGATCTTCGTCAGATGCTCAGTCACTTGCAAATTGGCAGACCTTACAATCCTTGCTTGAGTGACCTTGAAGATATTCCCAGCAACACTGTACATCTCAGAGCTGAATCTTCATCATGCCAGTCCATCGCCAACTCCATGGATAACCTACTCTTCATGGAGGATAAATCTTTAACTTTCTAA 753 42.9 MKPVPINMNGMVATCHRQARFLVWLCFTAKVFDEMLQRKSCCSDLAEMTGIQFFPSENAFQIPSNIGMIQNSFQTFHHLNDFLGNQPMSHVPHPGLEFLAQSLSFSYNSTSDEAEEQQKSIIDERKQRRMISNRESARRSRMRKQKHLDELWSQVLRLRSENHELVDKLNHISDCHEKLLLENAKLKEEASDLRQMLSHLQIGRPYNPCLSDLEDIPSNTVHLRAESSSCQSIANSMDNLLFMEDKSLTF 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8883631 8884973 + CmaCh18G010740.1 Cma18g01074 314412

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01074 250 CDD bZIP_plant_GBF1 126 176 IPR045314 GO:0003700|GO:0006355
Cma18g01074 250 SMART brlzneu 121 185 IPR004827 GO:0003700|GO:0006355
Cma18g01074 250 Coils Coil 176 196 - -
Cma18g01074 250 PANTHER BZIP PROTEIN (ATBZIP48) 46 240 - -
Cma18g01074 250 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 46 240 IPR044521 -
Cma18g01074 250 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 128 143 IPR004827 GO:0003700|GO:0006355
Cma18g01074 250 SUPERFAMILY Leucine zipper domain 125 175 IPR046347 GO:0003700|GO:0006355
Cma18g01074 250 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 123 186 IPR004827 GO:0003700|GO:0006355
Cma18g01074 250 Pfam bZIP transcription factor 125 183 IPR004827 GO:0003700|GO:0006355
Cma18g01074 250 Gene3D - 123 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01074 - - - cmax:111467727 408.683
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00989 Cma18g01074 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00434 Cma-Chr1:2191667 Cma18g01074 Cma-Chr18:8883631 5.00E-41 dispersed
Cma04g02190 Cma-Chr4:15282043 Cma18g01074 Cma-Chr18:8883631 2.88E-40 dispersed
Cma15g00841 Cma-Chr15:4260103 Cma18g01074 Cma-Chr18:8883631 7.85E-44 dispersed
Cma15g01426 Cma-Chr15:9016843 Cma18g01074 Cma-Chr18:8883631 2.59E-23 dispersed
Cma18g01074 Cma-Chr18:8883631 Cma12g00444 Cma-Chr12:2322580 1.44E-18 dispersed
Cma13g01053 Cma-Chr13:8007284 Cma18g01074 Cma-Chr18:8883631 3.48E-14 wgd
Cma15g00210 Cma-Chr15:1016332 Cma18g01074 Cma-Chr18:8883631 8.60E-56 wgd
Cma18g01074 Cma-Chr18:8883631 Cma04g01565 Cma-Chr4:7947641 9.23E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1021 . Blo16g01070 . . Bpe13g01357 Bpe10g00923 Bma14g01627 Bma15g00100 Cmo04g01636 Cmo18g01096 Cma04g00989 Cma18g01074 Car04g01617 Car18g00997 Sed06g1827 Cpe09g00249 Cpe01g01390 Bhi07g01419 Tan04g0937 Cmetu09g1500 Lac13g0423 Hepe10g1837 . . Cla05g02362 Cam05g2533 Cec05g2562 Cco05g2601 Clacu05g2528 Cmu05g2388 Cre05g2504 . . . . Lsi04g00324 Csa05g02545 Chy10g01085 Cme10g00324 Blo06g00950 Blo11g00811 Bda07g01496 . Bpe11g01623 . . Bma06g00750 . . Cmo15g00873 . . . Car15g00216 Cpe13g00999 . . . . . . . . . . . . . . . . . Chy09g00171 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006441 4 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36818 PF00170 bZIP_1 6.30E-13 CL0018 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01074 Cma_Chr18 FPKM 6.815405 4.938424 6.257248 5.811705 4.286286 5.838197 2.593831 4.676522 4.715496 4.795853