Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01075 ATGGCGTCTTCCCCCACTCCCATCTCTCCACTATCTTTTCCCAATCGGAGATCAAAACCAAAACCAAACAAACCGCCTCCATCATTGCCTCCGGCGTGGAAACCCAGCCCCAAATCTATGCCCAAGGAGATTTACTTTAACCGCGATGGCTCTGCCTTGAAAAAGCTTCAGGTTACGCACTCGGACGAGGCCCTAGTTTATCTTTCCTCGACAACTGATTTGTTTGATTTTGTTGCGCAGGTCGGTGTTGATTTGGTGGCGGAGTTGGTCGGTGTTACGTTAGGGCCGAAGGGGAGGAATGTGGTGCTTCAAAGCAAATATGGTCCGCCTAAGATCGTCAACGACGGGGAAACTGTCCTCAAAGAGATTGAATTGGAAGACCGTTTAGAGAACGTTGGGGTGAAATTGGTAAGACAAGCTGGTGCAAAGACAAATGACCTTGCTGGTGATGGTTCCACTACATCTGTCGTTCTTGCCCAGGGATTAATTGCTGAGGGTATGAAGGTTATTTCATCTGGCATGAGTCCTGTTCAAATTGCACGTGGAATTGAGAAGACTGCAAATGCACTAGTTTCTGAGCTGGAATTGATGTCAAGAGAGGTTGAAGATCATGAGATAGCACATGTTGCTGCAGTTAGTGCAGGGAATGATTACGCTGTGGGAAATATGATTTCAGATGCCTTACGTCAAGTTGGTAGGAAAGGAGTCGTCCAAATTGAAAAAGGGAAGAGTATCGATAACAGTCTGCAAATTGTTGAAGGGATGCAATTTGATTCTGGATATTTGTCTCCGTACTTTGTTACTGATAGACAGAAGATGATAGTAGAATTTCATGATTGCAAGTTACTGTTGGTCGACAAAAAAATCTCAGATCCAAAGGAGATGTTTAAAATATTGGACAGTGCAGTGAAAGAGAAGTATCCAATTGTGATCTTGGCAGAGGGGTTTGAGCAGGCAGCTTTGGCTCCAGTAATTAGGAATAAACTTAGAGGTGTGCTGAAGGCAGCTGCTATCAAGGCTCCTGCCTTTGGCGAGCGCAAGAGTCACTACTTAGATGACATAGCGACCCTAACTGGAGCAACTGTGATCAGAGAAGATAGTGGACTGACTTTAGAAAAGACTGGCAAAGAGGTATTGGGCTCTGCTACTAAGGTTGTTATAACGAAGGATTCCACACTAATAGTTACAGATGGGACTACTCGGGAAGCAGTTCAAAAAAGGGTTTTACAAATTCAAAAGCTTTTGGAGGTGCTGGAATCATCCCTTATCTATGCTGAGATATCCTACATTTCGAGGTTTTCTGCATTGCAGGATCCATTTCTAAGAGCACAAACTCAAGTTGAATTGAAGGATAAACAGTTAAGGATTGAGGATGCCTTGAATGCGTCAAAGGCTGCAATTGAAGAAGGTGTTGTCGTTGGTGGTGGTTGTTGTCTTTTAAGGCTGTCAACCAAGGTGGATGCTATAAAGAATGTCCTGGAAAATGAAGAGCAGATGATTGGTGCCGAAATTTTCAAAAGGGCTTTGAGTTATCCTACAAAACTAATTGCGAGAAACGCCGGTGTTAATGGAAGTGTGGTTATAGATAAGGTTCTAATTAACAATGATATGAATTATGGATATAATGCCGCCACAGACCATTACGAGGATTTAATGAAAGCTGGAATCATGGATCCATCGAAGCATGCAGCTTCTGTTGCCAAAACTTTTCTGACATCCGATGCTGTTGTAGTTGATATGAAGGAACCAGAACCCTTTCCAAGAAGAACGACGTTGCCCAACTCAGGCATCAAACGAATGGCTCTTTAG 1809 43.5 MASSPTPISPLSFPNRRSKPKPNKPPPSLPPAWKPSPKSMPKEIYFNRDGSALKKLQVTHSDEALVYLSSTTDLFDFVAQVGVDLVAELVGVTLGPKGRNVVLQSKYGPPKIVNDGETVLKEIELEDRLENVGVKLVRQAGAKTNDLAGDGSTTSVVLAQGLIAEGMKVISSGMSPVQIARGIEKTANALVSELELMSREVEDHEIAHVAAVSAGNDYAVGNMISDALRQVGRKGVVQIEKGKSIDNSLQIVEGMQFDSGYLSPYFVTDRQKMIVEFHDCKLLLVDKKISDPKEMFKILDSAVKEKYPIVILAEGFEQAALAPVIRNKLRGVLKAAAIKAPAFGERKSHYLDDIATLTGATVIREDSGLTLEKTGKEVLGSATKVVITKDSTLIVTDGTTREAVQKRVLQIQKLLEVLESSLIYAEISYISRFSALQDPFLRAQTQVELKDKQLRIEDALNASKAAIEEGVVVGGGCCLLRLSTKVDAIKNVLENEEQMIGAEIFKRALSYPTKLIARNAGVNGSVVIDKVLINNDMNYGYNAATDHYEDLMKAGIMDPSKHAASVAKTFLTSDAVVVDMKEPEPFPRRTTLPNSGIKRMAL 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8887679 8893638 + CmaCh18G010750.1 Cma18g01075 314413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01075 602 MobiDBLite consensus disorder prediction 1 40 - -
Cma18g01075 602 Gene3D GroEL 254 437 IPR027409 -
Cma18g01075 602 MobiDBLite consensus disorder prediction 19 37 - -
Cma18g01075 602 Gene3D - 200 470 IPR027410 -
Cma18g01075 602 Coils Coil 442 469 - -
Cma18g01075 602 PRINTS 60kDa chaperonin signature 330 353 IPR001844 GO:0042026|GO:0140662
Cma18g01075 602 PRINTS 60kDa chaperonin signature 90 116 IPR001844 GO:0042026|GO:0140662
Cma18g01075 602 PRINTS 60kDa chaperonin signature 458 479 IPR001844 GO:0042026|GO:0140662
Cma18g01075 602 PRINTS 60kDa chaperonin signature 146 173 IPR001844 GO:0042026|GO:0140662
Cma18g01075 602 Gene3D - 81 578 IPR027413 -
Cma18g01075 602 Coils Coil 187 207 - -
Cma18g01075 602 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 5 585 - -
Cma18g01075 602 CDD GroEL 82 579 IPR001844 GO:0042026|GO:0140662
Cma18g01075 602 ProSitePatterns Chaperonins cpn60 signature. 465 476 IPR018370 GO:0005524|GO:0006457
Cma18g01075 602 PANTHER CHAPERONIN 60 SUBUNIT BETA 4, CHLOROPLASTIC 5 585 - -
Cma18g01075 602 SUPERFAMILY GroEL apical domain-like 247 421 IPR027409 -
Cma18g01075 602 Pfam TCP-1/cpn60 chaperonin family 86 580 IPR002423 GO:0005524
Cma18g01075 602 SUPERFAMILY GroEL-intermediate domain like 204 266 IPR027410 -
Cma18g01075 602 SUPERFAMILY GroEL equatorial domain-like 80 577 IPR027413 -
Cma18g01075 602 Coils Coil 479 499 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01075 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - csv:101209342 873.233
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00809 Cma-Chr10:3747317 Cma18g01075 Cma-Chr18:8887679 0 dispersed
Cma18g01075 Cma-Chr18:8887679 Cma20g00503 Cma-Chr20:2454747 6.03E-148 dispersed
Cma18g01075 Cma-Chr18:8887679 Cma11g00774 Cma-Chr11:3764223 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1020 . . . . . Bpe10g00922 . Bma15g00101 . Cmo18g01097 . Cma18g01075 . Car18g00998 Sed06g1826 Cpe09g00248 . Bhi07g01420 Tan04g0938 Cmetu10g1844 Lac13g0422 Hepe10g1836 . . Cla05g02364 Cam05g2534 Cec05g2563 Cco05g2602 Clacu05g2529 Cmu05g2389 Cre05g2505 . . . . Lsi04g00325 Csa05g02544 . Cme10g00325 Blo06g00949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001807 3 2 3 1 3 2 3 1 2 1 2 2 3 2 2 2 2 4 3 2 2 2 1 2 2 2 2 4 2 3 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01075 Cma_Chr18 FPKM 0.0 0.0 4.941821 3.913425 30.854279 28.521378 31.312033 5.013628 4.951865 5.312228