Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01076 ATGGATGTTGGCGGCGGTGATCAATTTAGAGTAGAAAGCAGCCCGCAGGATTGTATGTCTTTGGATATGGCTGGTTGTTCTTCTTCCACTGCTCATGTGGTTGATTCATTTAGCTCTACCATTTGGGAACAAGCAGCTAATTCTCAAAACTTGGGACTCCTCGAAGAACATAACATATGTAGAACTTCAAACGACATAGCAATTAGCAAGACCATTGGCTGTCCTGTTCCTTTGAGCACTGACAGTGACAGAACACTTGATATCAGCTGGAGCTTGTCCAATAGTATGTTGAAAGGGGGAGGTTACCTTAATGCAATCCCGCCAAGCTTATCTCAACTTCCAGCTGATTCTTCGTTTATTGAGCGTGCAGCCAGGTTCTCCTGGTTTAGTGGTGGAAATTTTGGTGATGTTATTGGCCATTTTGATATTCCTGAGTCAATGGACGTTTTTTCTAGAGGTATGGGAGTAGTAATGCCTGAGAGACAGGAGGATGTTCCTAGACGAAATGGGTTAGGTTCGGTATCTCGAGCCGGAGGACGATTCCAAGGAAATACGGTTAACAGTGAAGCTTCCAAGCCTGTTTCTTTGCATAATGCAGCACATGGAAGCCTTTTGAAATTGGACGATTGTTGTAAACATGCTGTTGATGGTTCCGCTAATGAATCTGATGAAGCTGAGGTTAGCGGTGGCGATGGTTCGGGTGAGCCATGCACATTGGAGGTTGCAGGTAAGGAAGTTTCTGCTGAGGGCCTCGCTGCAAAGAAAAGGAAAAGGATTGGACAGAAGGCTGAACTTGATCAAGTCAATGGACCTCTGCAACGAACTAGTGTTGCAGCTAAGGATAATACTGAATCTCAGCTAAAGGGAGATCAAAACCCGAGCTCGACCGCAAACAAGGGTACAGTAAAGCACGGTAAACAGGCGTCTCAACCTTTAGATCCACCAAAGGAAGAGTATATTCATGTTCGAGCTCGAAGAGGCCAGGCGACAAACAGCCATAGTCTTGCAGAAAGGGTAAGGAGGGAGAAAATCAGTGAGAGGATGAAATTTCTTCAAGAACTAGTGCCTGGTTGCAGCAAGGTGACTGGGAAGGCAGTGATGCTCGATGAAATCATTAACTATGTTCAGTCTCTGCAGCGACAGGTCGAGTTTTTATCAATGAAACTCGCTACCGTCAATCCAAGGTTGGATATTAACATCGATGAACTTCTAGAGAAAGATATTCTTCAACCTCGAGCTGGTTCCTCATCGACATTGGGATTTTCTTCACATATGCCCGTTGCTTGTCCCCCGCCTCAGGTCTCTCATCGTGGACTTATCCCAGTCAGTTTCCCTGTCATAGCGAGCTCCGAGACGTTAAGAAGAAGCACAATAAGTTCCCAGATGACGCCGAGGTCCGGGGTATTTAAGGAGCCGACTCAGATAAAGAACATGTGGGATGGTGAACTCCATAACATTGTGCAGATGAGCTTTGGGATGTCCACTGCCCCTAATGGTTTAGCAGCTGAAGGATCTGATTCACCAGGCAATACAAAAGTTGAACAACACTGA 1551 45.78 MDVGGGDQFRVESSPQDCMSLDMAGCSSSTAHVVDSFSSTIWEQAANSQNLGLLEEHNICRTSNDIAISKTIGCPVPLSTDSDRTLDISWSLSNSMLKGGGYLNAIPPSLSQLPADSSFIERAARFSWFSGGNFGDVIGHFDIPESMDVFSRGMGVVMPERQEDVPRRNGLGSVSRAGGRFQGNTVNSEASKPVSLHNAAHGSLLKLDDCCKHAVDGSANESDEAEVSGGDGSGEPCTLEVAGKEVSAEGLAAKKRKRIGQKAELDQVNGPLQRTSVAAKDNTESQLKGDQNPSSTANKGTVKHGKQASQPLDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDINIDELLEKDILQPRAGSSSTLGFSSHMPVACPPPQVSHRGLIPVSFPVIASSETLRRSTISSQMTPRSGVFKEPTQIKNMWDGELHNIVQMSFGMSTAPNGLAAEGSDSPGNTKVEQH 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8899573 8903891 + CmaCh18G010760.1 Cma18g01076 314414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01076 516 MobiDBLite consensus disorder prediction 251 315 - -
Cma18g01076 516 MobiDBLite consensus disorder prediction 497 516 - -
Cma18g01076 516 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 20 514 IPR024097 GO:0006355
Cma18g01076 516 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 328 378 IPR011598 GO:0046983
Cma18g01076 516 MobiDBLite consensus disorder prediction 268 305 - -
Cma18g01076 516 MobiDBLite consensus disorder prediction 163 190 - -
Cma18g01076 516 Pfam Helix-loop-helix DNA-binding domain 331 379 IPR011598 GO:0046983
Cma18g01076 516 Gene3D - 325 399 IPR036638 GO:0046983
Cma18g01076 516 PANTHER TRANSCRIPTION FACTOR BHLH49 20 514 - -
Cma18g01076 516 SMART finulus 334 384 IPR011598 GO:0046983
Cma18g01076 516 CDD bHLH_AtBPE_like 318 403 - -
Cma18g01076 516 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 326 396 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02184 Cma-Chr4:15257436 Cma18g01076 Cma-Chr18:8899573 1.43E-121 dispersed
Cma09g00309 Cma-Chr9:1278151 Cma18g01076 Cma-Chr18:8899573 2.64E-55 dispersed
Cma15g00847 Cma-Chr15:4285394 Cma18g01076 Cma-Chr18:8899573 1.08E-122 dispersed
Cma18g01076 Cma-Chr18:8899573 Cma04g01570 Cma-Chr4:7972133 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36819 PF00010 HLH 5.60E-06 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01076 - - bhj:120081983 719.539