Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01080 ATGATAGGAAATGTGTATTCTTCAAAGGGAAATCACATGGCCACCATGAAAACAAACCCAAATATGTCTATGGCTGAACTTATCTTAGCTTCCATCTCAAAAATCCTAGATTCCACAACGTGCACTGAAGAACATGGACATTTTATTGAGATTGGAAGCTACTTTTATCGAGCATCTATGGCCATAATAGAGCTACAAGCAATAGACCCAATAAGATTTGATGAAATCCTCCAATCTCTAAACAAAAGCATCAATCTTGCAAAGGATCTTCTGGAGAAGTTCTTGACAGGCATTCAACAAGCCTCAGATTCTGAACCCATTAGCATCATAGATCCACTAAAAGAGCTGATAAAACAAATGGGTGAATGCTTGAACAAGGTAGCAACCTATAGTTTTGAGGATCAGAATTATGTGAAAGTGGCTATTCTATCACTTTCAGATGAGATGCAGAATATATCCTCTAAAATTGTCACAGCTCAAGCTGTAATTAACGAGCAAGAGATGCGAGCTTCTTCGTCGGATGAACAACCAGAAGTTATTGAAAATGATCTATACCCCATTGACATGGACTGGGACACAAACAATACACAATCCCCAGTTGAGTCAGAGTTGAGTGAAGCTGTTAAGTATAGAAATGTCACAGCAGTTTCGACAAAACGACCCTCGACAGCTAACTACATCGAGCCTCTTTTCGAGACCTTCATCTGTCCGTTGACGAAAGACATCATGGATGATCCAGTTAGCCTTGAAACGGGAGTGACATACGAAAGAAAAGCAATCGTCCAGTGGTTTGAAGAGTTTGAAGAATCTGAGGAAGTTTTCTGCCCAGTCACAGGACAAAAGCTTGTTTCCAAAGCTTTTAATTCAAACAGAGCTTTGAAGTCTACAATAGACAAATGGAAGGAACGTAATGAGATAGCAACAATCAAAGTCGCCAGAGCCGCTCTGTCTCTAGCCAGTTCAGACAAAATGATGCTCGAGGCAATCAAAGACCTGTCGAGCATCAGCAAAGGAAAGCAGTTCAACATAGAACGGATATTCGATTTTGACATGTTGCCTTTGCTCGTCGAATGTCTGGAGTACAGAAACAAAGATGTTAGATATGCAGTTCTTGAGTTATTGCATCAAATGGCAGAAATCAATGAAGACAACAAGAAGACAATCTGTAACCAATTGGACATGTCAAGAATGGTCAATCTCCTATCAAGTGGTCACAGGTCAATCCGGAACACATCTTTGCTTCTGTTGCATGAGCTTTCAAGAACACAGTCATTGACTGATCAAATTGGTTCAGTAACTGGGGGGATTTCGATGCTGATTGTCATGAAGAACGATAGGTCTGATGAATTTGCTTCAGAAAAGGCAGATGAAACCTTGAGAAACTTAGAGATATCTCCAACTAATATCAAGCTCATGGCAGAATATGGACTCATGGAGCCCCTAGTAAGGCATCTTACTGAAGGTAATGAGTGGATGAGAATAGAAATGGCAAGCTATCTTGGGGAGATGGTTATTAGACAAGATTGTATGGCATATGTAGCTGAGAAGGCCTCTCCAGCTCTTGTCGGTATGGTGCACGAAGGAGATACACTTGTCCGAAATGCGGCATTTAAAGCTTTATTGCAAATTTCATCTCACAGACCTAATGGTGAAATACTTGCAAAAGCTGGAACTGTACAAGTCATGGCTGAAGAGATTTTCACTCGTACCATCTGTGATGAACTTAATGATCCAAAAACAGAAGCAGCTGAAATTCTGGCAAATATATGCGATTCCAGTCTCGATCTCGAGACACTTCAAGTTAATGCTCATGGCTCCACTATGAGCTCAGATTATATAGTCTGCAACATCATCGACTTGCTCGATATCTCGACCCCAGATGAATTTAGCAAGAGCCTCATTAGAATACTATTATGCTTGACCAAATCTCCAAAAACAATGGACACCATTGTTTCAGGGGTAAAAAGCAGTGAAGCTTGTGATACCCTCATAGAGTTCCTCAATAGCCCAGATGAAGAACTTGGAATTGTGGCAATAAAACTGCTTATATCACTGTGCCCTTACATGGGCTTCACAATGGCAAAAAGACTCTGTGAAACCAGTGATCAAGTGGAGAATCTTATCAGTAGCATTACTTGGACAGACCAAGTCACAGAGAGGCAGGCACTTTCAGCAACATTCTTAGCAAAACTACCTCACCAGAGCCTGACTCTAAACACCGTTCTTGTGAACAAGAACATTGTGTCCAAGATCATGGAAACAATCGATCAAATACCGAGCGGTGGAATGGGAATGAAAAGGTATGCAAGTACTTTGCTAGAGGGTTCGGTGGGGATTCTTGTCAGATTCACATCAACACTTCATGATCCACAAATGTTGTTTATAGCAAAATTTCACAATTTTACATCAGTATTTACTAACCTTCTGGCGCAAACATCAAGTGATGAAGTTCAAAAGCTATCCGCCATTGGGTTGGAGAAACTCTCATCAGCATCCATGAGTCTATCAAAGCCCCTAGACACTGAAAGAAAAAGGGTCATAAAATTTCTCCACGTACCCAAGCTTCTATCGCTAGGTTCATCAAAGAAGGGTCAGTTACGAGTATGCCCAGTTCATAAAGGGGCTTGCTCTTCACAAAACACATTCTGTTTAGTCCATGCAAAGGCAATTGAAAAGCTATTGAGGTGTTTAGACAATGAGAAGGAAGAGGTAGCTGAGGCAGCTCTGTCAGCCATTTGTACGCTTGTGGATGACAAAGTGGATGTGGACAGAAGTGTGAGCCTACTAAACGAATTTGACACAATAAAGCATGTCCTGAATGTGGTGAGAATGCACAAGCAAGAATCTCTATGGCATAAATCCTTCTGGTTGATCGAGAAGTTCTTGCTTAAGGGTGGGGAAAACTCACTTTCCAATATATCACAGGACAGATCATTGCCTACAATATTGGCGGCTGCTTCACATCAAGGGAGCAGCGAAACAAGGCAGATAGCTGAAAAGATATTGACCCATTTGAATATGGTACCAAATTTCTCTGCTCCTAATTATACTCTGTGA 3057 41.12 MIGNVYSSKGNHMATMKTNPNMSMAELILASISKILDSTTCTEEHGHFIEIGSYFYRASMAIIELQAIDPIRFDEILQSLNKSINLAKDLLEKFLTGIQQASDSEPISIIDPLKELIKQMGECLNKVATYSFEDQNYVKVAILSLSDEMQNISSKIVTAQAVINEQEMRASSSDEQPEVIENDLYPIDMDWDTNNTQSPVESELSEAVKYRNVTAVSTKRPSTANYIEPLFETFICPLTKDIMDDPVSLETGVTYERKAIVQWFEEFEESEEVFCPVTGQKLVSKAFNSNRALKSTIDKWKERNEIATIKVARAALSLASSDKMMLEAIKDLSSISKGKQFNIERIFDFDMLPLLVECLEYRNKDVRYAVLELLHQMAEINEDNKKTICNQLDMSRMVNLLSSGHRSIRNTSLLLLHELSRTQSLTDQIGSVTGGISMLIVMKNDRSDEFASEKADETLRNLEISPTNIKLMAEYGLMEPLVRHLTEGNEWMRIEMASYLGEMVIRQDCMAYVAEKASPALVGMVHEGDTLVRNAAFKALLQISSHRPNGEILAKAGTVQVMAEEIFTRTICDELNDPKTEAAEILANICDSSLDLETLQVNAHGSTMSSDYIVCNIIDLLDISTPDEFSKSLIRILLCLTKSPKTMDTIVSGVKSSEACDTLIEFLNSPDEELGIVAIKLLISLCPYMGFTMAKRLCETSDQVENLISSITWTDQVTERQALSATFLAKLPHQSLTLNTVLVNKNIVSKIMETIDQIPSGGMGMKRYASTLLEGSVGILVRFTSTLHDPQMLFIAKFHNFTSVFTNLLAQTSSDEVQKLSAIGLEKLSSASMSLSKPLDTERKRVIKFLHVPKLLSLGSSKKGQLRVCPVHKGACSSQNTFCLVHAKAIEKLLRCLDNEKEEVAEAALSAICTLVDDKVDVDRSVSLLNEFDTIKHVLNVVRMHKQESLWHKSFWLIEKFLLKGGENSLSNISQDRSLPTILAAASHQGSSETRQIAEKILTHLNMVPNFSAPNYTL 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8910909 8916005 - CmaCh18G010800.1 Cma18g01080 314418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01080 1018 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 20 1017 - -
Cma18g01080 1018 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 42-RELATED 20 1017 - -
Cma18g01080 1018 Gene3D - 779 1013 IPR011989 -
Cma18g01080 1018 ProSiteProfiles U-box domain profile. 229 307 IPR003613 GO:0004842|GO:0016567
Cma18g01080 1018 Pfam U-box domain 232 305 IPR003613 GO:0004842|GO:0016567
Cma18g01080 1018 Gene3D - 510 686 IPR011989 -
Cma18g01080 1018 Coils Coil 887 907 - -
Cma18g01080 1018 Pfam Armadillo/beta-catenin-like repeat 877 915 IPR000225 GO:0005515
Cma18g01080 1018 SMART Ubox_2 233 300 IPR003613 GO:0004842|GO:0016567
Cma18g01080 1018 SMART arm_5 877 917 IPR000225 GO:0005515
Cma18g01080 1018 SMART arm_5 339 379 IPR000225 GO:0005515
Cma18g01080 1018 SMART arm_5 381 421 IPR000225 GO:0005515
Cma18g01080 1018 SMART arm_5 465 505 IPR000225 GO:0005515
Cma18g01080 1018 SUPERFAMILY RING/U-box 217 309 - -
Cma18g01080 1018 Gene3D - 306 509 IPR011989 -
Cma18g01080 1018 SUPERFAMILY ARM repeat 571 1006 IPR016024 -
Cma18g01080 1018 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 305 IPR013083 -
Cma18g01080 1018 SUPERFAMILY ARM repeat 316 650 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01080 - - - csv:101217719 1444.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00970 Cma-Chr5:7829293 Cma18g01080 Cma-Chr18:8910909 3.45E-120 dispersed
Cma18g00877 Cma-Chr18:7592409 Cma18g01080 Cma-Chr18:8910909 3.38E-26 dispersed
Cma18g01080 Cma-Chr18:8910909 Cma01g00596 Cma-Chr1:3130763 7.50E-20 dispersed
Cma18g01080 Cma-Chr18:8910909 Cma04g01345 Cma-Chr4:6866473 3.49E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1007 . Blo16g01073 . Bda11g01163 Bpe13g01362 . . . . Cmo18g01102 . Cma18g01080 . Car18g01002 Sed08g1853 Cpe09g00244 . Bhi07g01438 Tan04g0950 Cmetu03g1218 Lac13g0414 Hepe10g1828 . . Cla05g02371 Cam05g2539 Cec05g2569 Cco05g2608 Clacu05g2536 Cmu05g2395 Cre05g2512 . . . . Lsi04g00332 Csa05g02538 Chy10g01080 . . . . Bda11g01163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012245 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01080 Cma_Chr18 FPKM 9.066882 9.392815 1.450028 1.554927 0.368722 0.252489 0.468715 11.009177 9.894175 9.637613