Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01089 ATGCATAATTCTTCGGTGAAAGAGATGAACATGAGCTTTTCAAACGATATGGGCGATGAATATCAGAAATTCATCAGGCGAATGAACCCACCCAGAGTCGTAATCGATAACAAGTCCTGCAAGAACGCCACGGTTGTTCGGGTGGATAGTGCTAATAAACATGGCATTCTTCTTGAAGTTGTTCAAGTCTTGACTGATCTTAATCTTATCATAACTAAAGCTTACATTTCTTCTGATGGGAACTGGTTCATGGATGTTTTTAATGTCACGGATCAAAATGGGAACAAGGTTATGGATGAAGGGATTTTAGATTACATACGATCATCGCTCGGTCCCGATTCATGTTGCTCATCTTCCATGAGATCTGTAGGTGTTGAATCTTCTACAGATCATACTGCAATTGAGCTCGTTGGCTGCGATCGACCCGGACTTCTTTCTGAAGTAACTGCTGTTCTTACTCATCTTAAATGTAGTGTAGAAAGAGCTGAGGTGTGGACACATAACACTCGAGTTGCTGCGGTGATGCACGTGAGCGACGAGGAAGCGTCGGTCACTGGTTCGGCAGTGACAGACTTGGAGAGATTGTCCACAATCAAGAAATTGCTTTGCAATGTGCTTAAAGGCAGCAACAAGTGCAGGGGAGCTAAGACTGTGTTCTCTCATGAGGCTATCCATACTGAGAGACGACTTCACCAGATGATGTTTGCGGATCGAGATTACGAGCGAGCGGACGATGAAAGGTTCCATGGAAAACAGAAGCCAAATGTGAATGTTGTCAATTTGTTTGACAAAGATTATTCAGTGGTCACCATTCAATGCAAGGATAGACCAAAACTTCTGTTTGATACAGTTTGTACATTGACTGATATGCAATATGTTGTTTTTCATGCCAATGTTGATGCTGAAGGGCCAGAGGCTTATCAGGAATATTATATTAGGCACATAGATGGATCTCCTGTGAATTCAGAAGCTGAGAGACAAAGGTTGATACAATGTCTTGGAGCTGCCATTGAAAGACGAGTATCCGAGGGATTGAAGCTTGAGCTATGCACTACTGATAGAGTTGGGCTACTCTCTGATGTCACACGCATCTTCAGAGAGAATAGCTTGAGTGTGAGTCGAGCCGAAGTGAGAACGGAAGGAGGCAATGCAATGAATACATTTTACGTGCGCGATGCGTCGGGTTATCCCATCGATTCAAAGACGATAGATTCGATAAGGCAAGTGATTGGTCAGTCCATATTGAAGGTGAAAGGCAGCCCTGATGAAGGGAAATCTGATTCACAAGACTCTCCAAGTAGGTTCCTGTTTGGTGGTCTGTTTAAGTCGAGATCTTTAGTGAATTTTGGATTGGTTAGATCATATTCTTGA 1371 43.03 MHNSSVKEMNMSFSNDMGDEYQKFIRRMNPPRVVIDNKSCKNATVVRVDSANKHGILLEVVQVLTDLNLIITKAYISSDGNWFMDVFNVTDQNGNKVMDEGILDYIRSSLGPDSCCSSSMRSVGVESSTDHTAIELVGCDRPGLLSEVTAVLTHLKCSVERAEVWTHNTRVAAVMHVSDEEASVTGSAVTDLERLSTIKKLLCNVLKGSNKCRGAKTVFSHEAIHTERRLHQMMFADRDYERADDERFHGKQKPNVNVVNLFDKDYSVVTIQCKDRPKLLFDTVCTLTDMQYVVFHANVDAEGPEAYQEYYIRHIDGSPVNSEAERQRLIQCLGAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLSVSRAEVRTEGGNAMNTFYVRDASGYPIDSKTIDSIRQVIGQSILKVKGSPDEGKSDSQDSPSRFLFGGLFKSRSLVNFGLVRSYS 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8958712 8963762 + CmaCh18G010890.1 Cma18g01089 314427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01089 456 SUPERFAMILY ACT-like 342 409 IPR045865 -
Cma18g01089 456 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 12 454 IPR040217 -
Cma18g01089 456 CDD ACT_ACR_3 266 340 - -
Cma18g01089 456 ProSiteProfiles ACT domain profile. 45 125 IPR002912 -
Cma18g01089 456 ProSiteProfiles ACT domain profile. 346 422 IPR002912 -
Cma18g01089 456 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-LIKE ISOFORM X1 12 454 - -
Cma18g01089 456 CDD ACT_ACR_1 43 112 - -
Cma18g01089 456 Gene3D - 127 206 - -
Cma18g01089 456 Pfam ACT domain 44 95 IPR002912 -
Cma18g01089 456 Pfam ACT domain 140 187 IPR002912 -
Cma18g01089 456 Pfam ACT domain 352 397 IPR002912 -
Cma18g01089 456 SUPERFAMILY ACT-like 128 197 IPR045865 -
Cma18g01089 456 ProSiteProfiles ACT domain profile. 133 220 IPR002912 -
Cma18g01089 456 SUPERFAMILY ACT-like 40 108 IPR045865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01089 - - - jcu:105630587 734.176
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01711 Cma18g01089 CCT
Cma04g01711 Cma18g01089 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00110 Cma-Chr12:458410 Cma18g01089 Cma-Chr18:8958712 0 dispersed
Cma14g01453 Cma-Chr14:11077923 Cma18g01089 Cma-Chr18:8958712 0 dispersed
Cma15g00070 Cma-Chr15:343026 Cma18g01089 Cma-Chr18:8958712 2.11E-175 dispersed
Cma15g01174 Cma-Chr15:7433577 Cma18g01089 Cma-Chr18:8958712 5.71E-162 dispersed
Cma17g01428 Cma-Chr17:9410072 Cma18g01089 Cma-Chr18:8958712 0 dispersed
Cma18g01089 Cma-Chr18:8958712 Cma04g02981 Cma-Chr4:19544934 3.84E-177 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g2 Blo01g00462 . . . . Bpe10g00911 Bma14g01718 . Cmo04g01798 Cmo18g01113 . Cma18g01089 . Car18g01010 . Cpe09g00233 Cpe01g01517 . . . . . . . . . . . . . . Cone13ag0891 Cone19ag0890 Cone6ag0514 Cone9ag0526 . Csa05g02523 . . Blo06g00939 Blo11g00801 . . . . . . . . . Cma04g01711 . Car04g01745 . . Cpe07g00095 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002935 2 4 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 2 2 1 1 2 3 4 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01089 Cma_Chr18 FPKM 2.685935 2.778355 0.683035 0.858708 19.339569 20.485878 19.626196 0.408498 0.380991 0.286173