Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01089 ATGCATAATTCTTCGGTGAAAGAGATGAACATGAGCTTTTCAAACGATATGGGCGATGAATATCAGAAATTCATCAGGCGAATGAACCCACCCAGAGTCGTAATCGATAACAAGTCCTGCAAGAACGCCACGGTTGTTCGGGTGGATAGTGCTAATAAACATGGCATTCTTCTTGAAGTTGTTCAAGTCTTGACTGATCTTAATCTTATCATAACTAAAGCTTACATTTCTTCTGATGGGAACTGGTTCATGGATGTTTTTAATGTCACGGATCAAAATGGGAACAAGGTTATGGATGAAGGGATTTTAGATTACATACGATCATCGCTCGGTCCCGATTCATGTTGCTCATCTTCCATGAGATCTGTAGGTGTTGAATCTTCTACAGATCATACTGCAATTGAGCTCGTTGGCTGCGATCGACCCGGACTTCTTTCTGAAGTAACTGCTGTTCTTACTCATCTTAAATGTAGTGTAGAAAGAGCTGAGGTGTGGACACATAACACTCGAGTTGCTGCGGTGATGCACGTGAGCGACGAGGAAGCGTCGGTCACTGGTTCGGCAGTGACAGACTTGGAGAGATTGTCCACAATCAAGAAATTGCTTTGCAATGTGCTTAAAGGCAGCAACAAGTGCAGGGGAGCTAAGACTGTGTTCTCTCATGAGGCTATCCATACTGAGAGACGACTTCACCAGATGATGTTTGCGGATCGAGATTACGAGCGAGCGGACGATGAAAGGTTCCATGGAAAACAGAAGCCAAATGTGAATGTTGTCAATTTGTTTGACAAAGATTATTCAGTGGTCACCATTCAATGCAAGGATAGACCAAAACTTCTGTTTGATACAGTTTGTACATTGACTGATATGCAATATGTTGTTTTTCATGCCAATGTTGATGCTGAAGGGCCAGAGGCTTATCAGGAATATTATATTAGGCACATAGATGGATCTCCTGTGAATTCAGAAGCTGAGAGACAAAGGTTGATACAATGTCTTGGAGCTGCCATTGAAAGACGAGTATCCGAGGGATTGAAGCTTGAGCTATGCACTACTGATAGAGTTGGGCTACTCTCTGATGTCACACGCATCTTCAGAGAGAATAGCTTGAGTGTGAGTCGAGCCGAAGTGAGAACGGAAGGAGGCAATGCAATGAATACATTTTACGTGCGCGATGCGTCGGGTTATCCCATCGATTCAAAGACGATAGATTCGATAAGGCAAGTGATTGGTCAGTCCATATTGAAGGTGAAAGGCAGCCCTGATGAAGGGAAATCTGATTCACAAGACTCTCCAAGTAGGTTCCTGTTTGGTGGTCTGTTTAAGTCGAGATCTTTAGTGAATTTTGGATTGGTTAGATCATATTCTTGA 1371 43.03 MHNSSVKEMNMSFSNDMGDEYQKFIRRMNPPRVVIDNKSCKNATVVRVDSANKHGILLEVVQVLTDLNLIITKAYISSDGNWFMDVFNVTDQNGNKVMDEGILDYIRSSLGPDSCCSSSMRSVGVESSTDHTAIELVGCDRPGLLSEVTAVLTHLKCSVERAEVWTHNTRVAAVMHVSDEEASVTGSAVTDLERLSTIKKLLCNVLKGSNKCRGAKTVFSHEAIHTERRLHQMMFADRDYERADDERFHGKQKPNVNVVNLFDKDYSVVTIQCKDRPKLLFDTVCTLTDMQYVVFHANVDAEGPEAYQEYYIRHIDGSPVNSEAERQRLIQCLGAAIERRVSEGLKLELCTTDRVGLLSDVTRIFRENSLSVSRAEVRTEGGNAMNTFYVRDASGYPIDSKTIDSIRQVIGQSILKVKGSPDEGKSDSQDSPSRFLFGGLFKSRSLVNFGLVRSYS 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8958712 8963762 + CmaCh18G010890.1 Cma18g01089 314427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01089 456 SUPERFAMILY ACT-like 342 409 IPR045865 -
Cma18g01089 456 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 12 454 IPR040217 -
Cma18g01089 456 CDD ACT_ACR_3 266 340 - -
Cma18g01089 456 ProSiteProfiles ACT domain profile. 45 125 IPR002912 -
Cma18g01089 456 ProSiteProfiles ACT domain profile. 346 422 IPR002912 -
Cma18g01089 456 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-LIKE ISOFORM X1 12 454 - -
Cma18g01089 456 CDD ACT_ACR_1 43 112 - -
Cma18g01089 456 Gene3D - 127 206 - -
Cma18g01089 456 Pfam ACT domain 44 95 IPR002912 -
Cma18g01089 456 Pfam ACT domain 140 187 IPR002912 -
Cma18g01089 456 Pfam ACT domain 352 397 IPR002912 -
Cma18g01089 456 SUPERFAMILY ACT-like 128 197 IPR045865 -
Cma18g01089 456 ProSiteProfiles ACT domain profile. 133 220 IPR002912 -
Cma18g01089 456 SUPERFAMILY ACT-like 40 108 IPR045865 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01711 Cma18g01089 CCT
Cma04g01711 Cma18g01089 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00110 Cma-Chr12:458410 Cma18g01089 Cma-Chr18:8958712 0 dispersed
Cma14g01453 Cma-Chr14:11077923 Cma18g01089 Cma-Chr18:8958712 0 dispersed
Cma15g00070 Cma-Chr15:343026 Cma18g01089 Cma-Chr18:8958712 2.11E-175 dispersed
Cma15g01174 Cma-Chr15:7433577 Cma18g01089 Cma-Chr18:8958712 5.71E-162 dispersed
Cma17g01428 Cma-Chr17:9410072 Cma18g01089 Cma-Chr18:8958712 0 dispersed
Cma18g01089 Cma-Chr18:8958712 Cma04g02981 Cma-Chr4:19544934 3.84E-177 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01089 - - jcu:105630587 734.176