Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01098 ATGGAATCTCGTGGGGCAAACCAAACACACAGGCATCAGGCATCAGGCAGCAGCCAAGGCCAATACCAATGCCAAGGGCAGCGCCAAGGCCAAGGCCAATGCCAAGGTTTGTCTGGTGGAGGTGATGGGTCTGCAAAAGTGCAGTGCAGAAGACAACACTTAATGAGCTCCGAAGACAAAGCTTCCATGGATTTGGTCCAACCTTCTGAGCATCTCTGCTATGTCAAATGCAACTTTTGCAACACTGTTCTTGCGGTTGGAATTCCATGCAGACGTTTGTTGGATACAGTGACAGTGAAATGTGGTCATTGTAGTAATCTCTCCTTTTTGAGCACAAGACCTCCTTTACAGGGCCAATGTATTGATCATCCTCTCAGTTTTCAGTCTCAGGTTGGCTTCTCTAACAATATCCGAAAGGGGGCATCGACATCGTCGTCGTCGTCGTCGTCGTCGTCATCTTCGATGGCTAATGAAGAGGAGATTCAACGAATCAAAGCTGCCAACCCAGAAATCCCACATCGAGAAGCATTCAGTGCAGCAGCCAAGAACAACAGTGGGCTCGATACATTCCAAATTCAGTTGATGGGTCGGCTTCTGGGACTCACGACAATGAATGAAAAGGGTTTAGGGCAAATCAAGTGGATGTCTAGGGTTTCATAA 660 47.88 MESRGANQTHRHQASGSSQGQYQCQGQRQGQGQCQGLSGGGDGSAKVQCRRQHLMSSEDKASMDLVQPSEHLCYVKCNFCNTVLAVGIPCRRLLDTVTVKCGHCSNLSFLSTRPPLQGQCIDHPLSFQSQVGFSNNIRKGASTSSSSSSSSSSSMANEEEIQRIKAANPEIPHREAFSAAAKNNSGLDTFQIQLMGRLLGLTTMNEKGLGQIKWMSRVS 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 8991641 8995269 - CmaCh18G010980.1 Cma18g01098 314436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01098 219 MobiDBLite consensus disorder prediction 1 24 - -
Cma18g01098 219 PANTHER PROTEIN CRABS CLAW 158 186 - -
Cma18g01098 219 MobiDBLite consensus disorder prediction 8 24 - -
Cma18g01098 219 MobiDBLite consensus disorder prediction 138 160 - -
Cma18g01098 219 MobiDBLite consensus disorder prediction 138 159 - -
Cma18g01098 219 PANTHER PROTEIN CRABS CLAW 61 154 - -
Cma18g01098 219 PANTHER PROTEIN YABBY 6-RELATED 61 154 IPR006780 GO:0007275
Cma18g01098 219 PANTHER PROTEIN YABBY 6-RELATED 158 186 IPR006780 GO:0007275
Cma18g01098 219 Pfam YABBY protein 159 184 IPR006780 GO:0007275
Cma18g01098 219 Pfam YABBY protein 68 153 IPR006780 GO:0007275
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01709 Cma18g01098 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01098 Cma-Chr18:8991641 Cma12g01202 Cma-Chr12:9427635 3.20E-25 dispersed
Cma18g01098 Cma-Chr18:8991641 Cma04g01709 Cma-Chr4:8594676 3.29E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36820 PF04690 YABBY 9.40E-22 CL0114 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01098 K25796 - csv:101219863 201.83