Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01102 ATGGATCCCCCACCCTCCTACCGCAGTCACAGAGTCACCAACAAACCTCAGCTATACTCCACAGTTGTCATCCATTCCAATTCTGATTCAGACGCCGACAACAAACCTACCGATCGGATACTTCAGCGCCGACGAAGACCGCCGAGCGAAGGTGAAGACCTATACGCCACAATGGTCTATAAGGACGTTGATCAGGGCCACGAGGACGAGGATGACGATGATTCGTCTCTCCCACCTCTCCTCAAACGTCTTCCAAAGGATTTCGGGGGTGGAGCCCCAATTGACTACAACGACGACAAAGATTTTGGATTTGATCACGATACTGAAGATTTTGGTACGGTGATCGTCAAAACGGGAAGGAGTCGCCCTCTTAATCGTTCTTTGTCTTCATCAGTTTCGGCGAAGCCTCGAAATTCGGCGTTGCCATCCGTGAACTTTCAGACGGGGAGCTCCGGGACGAGATCAGGCGGGAGAGATGGTAGCGAGGAAGGCGATGTGAGCGAGGAAGATGATGGTGATGGGTATTCGACGTTCGTGGTGAAGCCCTCGGCGAGGTCGCGGAACAGAGAATCTGTTAGTGACACCATTCTTCGAAGGAGCGTTGCTAGTCGTAGTGATACCAGAGATGGAGGCGGAGGACTTGAGGGGTCTACGTTGGGCAGAGCGGTGGCGAGCATGCAAGGAATGGGAGAGTTAGGGTTTGGGAAGCAGAGGAAGGGGGCTGGATCGCCGAAGAGTGAGGAAGGCGGTGGTCGGATGCGCAGTAAGGTATCCACGAGTTCGATTCCTGAAAGCATCACCAGGGAAGATCCAAATACCAAGTATGAATTGCTCAACGAACTCGGAAAGGGGTCCTATGGGGCTGTTTATAAAGCAAGAGATATTAAGACCTCTGAGCTTGTTGCTATCAAGGTCATTTCTTTGTGTGAAGGGGAGGAAGGATATGAAGAAATTCGTGGTGAAATAGAGATGTTGCAGCAGTGCAGTCATCCGAACGTTGTCCGCTATCTTGGGAGCTACCAGGGAGAGGAGTATCTATGGATAGTAATGGAGTACTGTGGGGGTGGCAGTGTTGCTGACTTGATGAATGTTACTGAAGAAGCACTAGAGGAATATCAGATAGCATATATCTGTAGGGAGGCATTGAAGGGCCTCACTTATCTTCATTCGATTTTCAAAGTACATAGAGATATCAAGGGCGGCAATATTTTGTTAACCGAACAAGGAGATGTCAAGTTGGGTGATTTTGGAGTTGCAGCCCAGCTAACTAGGACCATGTCAAAGCGCAATACATTCATTGGTACTCCCCATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGATACGATGGGAAGGTGGATGTGTGGGCTCTTGGTGTTTCTGCTATCGAAATGGCTGAGGGACTTCCTCCAAGATCAGCCGTGCATCCAATGAGGGTTTTATTCATGATATCCATTGAGCCAGCTCCAATGCTTGAAGACAAAGAAAAATGGTCCTTGTTGTTCCACGATTTTGTTGCAAAGTGTCTGACAAAAGATCCCCGTTCACGTCCTGCTGCTTCTGAGATGTTGAAGCACAAATTCATTGAGAAATGCAGATGTGGCGCATCAGCAATGTTGCCAAAGATTGAAAAGGCAAGGAAAATCAGGACTTTGTTGATGGCTCAGCAAGCTCGTAGTGTTCCTCCAGATGCATCAGGAGATGGTACTATAGTAGCTGCAAAGTTGAATCAAAACTATGGAGATACTGTTCCTTCAAAACCTCAGAATGTTGGACTTCAGGTAGCAAATGAAATGTCATGGAGGAAGCAAGAGCAATCGGGTGTAGAAGCCGAAGGTACTTTTGGCACTATGATAGTCCATGATGGAGATGAAAATGATAAGGTGGCCTCTCGACTGGATACTGGCAATGCTGTAGCACCAACTGGTCCTTCAAGCAATGAGAGCCAATCCGTTGGTGTAACTGGAGTCAAAATTGTGGACTCTAGTGTGGTGGATTGTACGGGAGGTATTGCTAGTAATAATCTTGATGGAAAATTAGATCCTGCCATTCCTGCATCTTCCCCCTCATTTTTGGGTATTCATGAGATTAGCACGTTGGAAAATGAAACTGTCAGCCGGAAATCTTTTGCTCTGCAGGATAAGCTTTGGTCCATTTATGCAGCGGGTAACACTGTACCCATTCCATTCTTGAGAGCTACTGATATATCCCCCATTGCTTTGTTATCTGACAATGTCCTCGGAGGCATGCAACAAGATAACAGGGGTACTGTAGCAGTGGAAACGCTTCAGGAACTCTTCACCGGTGATGGACAATCAAAAAAGGGTCGCAGGGGACAAAATGAGATGCCGCTTCCATCCAGTGTTTATCAAAGACTTACTTCAAGTCCGACCCTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTATGAAGATATGCCGCTTCAGGAGTTGCAGGCGACTCAAGAACAACAAACCATCCAAAATCTTTGTGATACACTTAGAACTATCCTTCGATTGTAG 2532 47.27 MDPPPSYRSHRVTNKPQLYSTVVIHSNSDSDADNKPTDRILQRRRRPPSEGEDLYATMVYKDVDQGHEDEDDDDSSLPPLLKRLPKDFGGGAPIDYNDDKDFGFDHDTEDFGTVIVKTGRSRPLNRSLSSSVSAKPRNSALPSVNFQTGSSGTRSGGRDGSEEGDVSEEDDGDGYSTFVVKPSARSRNRESVSDTILRRSVASRSDTRDGGGGLEGSTLGRAVASMQGMGELGFGKQRKGAGSPKSEEGGGRMRSKVSTSSIPESITREDPNTKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEALEEYQIAYICREALKGLTYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLLFHDFVAKCLTKDPRSRPAASEMLKHKFIEKCRCGASAMLPKIEKARKIRTLLMAQQARSVPPDASGDGTIVAAKLNQNYGDTVPSKPQNVGLQVANEMSWRKQEQSGVEAEGTFGTMIVHDGDENDKVASRLDTGNAVAPTGPSSNESQSVGVTGVKIVDSSVVDCTGGIASNNLDGKLDPAIPASSPSFLGIHEISTLENETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGMQQDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPSSVYQRLTSSPTLLNLAQALAYHRMCYEDMPLQELQATQEQQTIQNLCDTLRTILRL 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9013246 9022929 - CmaCh18G011020.1 Cma18g01102 314440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01102 843 SMART serkin_6 275 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01102 843 ProSitePatterns Protein kinases ATP-binding region signature. 281 304 IPR017441 GO:0005524
Cma18g01102 843 MobiDBLite consensus disorder prediction 31 51 - -
Cma18g01102 843 ProSiteProfiles Protein kinase domain profile. 275 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01102 843 MobiDBLite consensus disorder prediction 24 102 - -
Cma18g01102 843 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 217 833 - -
Cma18g01102 843 Pfam Protein kinase domain 275 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01102 843 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 217 833 - -
Cma18g01102 843 MobiDBLite consensus disorder prediction 231 268 - -
Cma18g01102 843 Gene3D Transferase(Phosphotransferase) domain 1 271 560 - -
Cma18g01102 843 MobiDBLite consensus disorder prediction 121 157 - -
Cma18g01102 843 MobiDBLite consensus disorder prediction 253 268 - -
Cma18g01102 843 CDD STKc_MAP4K3_like 274 529 - -
Cma18g01102 843 MobiDBLite consensus disorder prediction 121 218 - -
Cma18g01102 843 SUPERFAMILY Protein kinase-like (PK-like) 273 530 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00851 Cma-Chr9:4166682 Cma18g01102 Cma-Chr18:9013246 6.30E-83 dispersed
Cma16g01228 Cma-Chr16:9292258 Cma18g01102 Cma-Chr18:9013246 2.92E-57 dispersed
Cma18g01102 Cma-Chr18:9013246 Cma14g00965 Cma-Chr14:5026924 5.16E-56 dispersed
Cma18g01102 Cma-Chr18:9013246 Cma01g01216 Cma-Chr1:8808292 5.92E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69313 PF00069 Pkinase 7.70E-68 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01102 - - csv:101209775 1343.95