Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01103 ATGGGCGAAGCAAACGAAGCAGGAAGTAGAGGATTGGAGAGGGTTCCTCTGCAAATCGAGAAGTACCCAACAGATCTGTTGCAGAGATTTTTGTGTAGCGATTCACGTGATGCTAAACTTGGGGTTTTTAATGAAGAAGATGAAGAAGCAGGGGAGATTGAGCTCAATCTTGGGCTTTCACTTGGGGGTCGATTTGGGGTTGATAACAATTCCAAGCTTATTCGGTCGTCGTCGGTTGTCGGGACGATACCGCTTTTGAGAGACGACGAGGGCTCTATTCCGGCGGCGGTGTCTTACCCGGCGCTGATTCGGACGTCGTCTCTTCCGCCGGAGACGGAGGAGGAGTGGAGGAAGAGAAAGGCGTTGCAGACATTGAGGCGAATGGAGGCGAAGAGGAGGCGGTTTGAGAAACAGAGGAGTAAGGATGGTATTGGGATTGAAGAAGAGAGGCGAGGAATTGATGGTCTTACTGTATTGAATTTGCGAGAGAAAAGGCCTTGTGCCGGTGTGTCGACGGTGGTGCCACCGTTTGGGTTGCCTACATGGGCTGCAGCCGCCCGTCATGTTGGCGGAACTTTGGAGGGTGGTGGTGGCGGTGGCGGTGGCTTACCGGTTGTCCGACAGCCAGCATCTCAGTGTTCCGCAGAATCGCAGGGCGGAAGCTCGTCGGGAATGTCGGAATTGGACAGCAAACACATCCAAGGAACAAGCAATTACGGTGAAGCGAGAAGCTCGTCGCAAGAACGAGGCAATCCAGAGGCTGCAGGTTCCATAGGATCGAATAAGGCGTGTGAGAACCCATCGGGCAGTTCGAAAGCAGAAACAAGAAACCCGAGCGAGAACCGGGGAAGGGAAACGGGAACGACGTCGATGGAAGACATGCCATGTGTGTTCACAATAGGGGATGGGCCTGGTGGGAGAAGGGTGGAAGGGATACTTTACAAGTATGGGAAAGGGGAGGAAGTGAGGATAATGTGTGTATGCCATGGGAAGTTTCTGTCACCAGCGGAGTTTGTGAAGCATGCTGGTGGGAAGAATGTGGCTCATCCGCTAAGACACATAGTTGTCAATCCCAATTCTGGCCCTTCTTTGTGA 1095 52.79 MGEANEAGSRGLERVPLQIEKYPTDLLQRFLCSDSRDAKLGVFNEEDEEAGEIELNLGLSLGGRFGVDNNSKLIRSSSVVGTIPLLRDDEGSIPAAVSYPALIRTSSLPPETEEEWRKRKALQTLRRMEAKRRRFEKQRSKDGIGIEEERRGIDGLTVLNLREKRPCAGVSTVVPPFGLPTWAAAARHVGGTLEGGGGGGGGLPVVRQPASQCSAESQGGSSSGMSELDSKHIQGTSNYGEARSSSQERGNPEAAGSIGSNKACENPSGSSKAETRNPSENRGRETGTTSMEDMPCVFTIGDGPGGRRVEGILYKYGKGEEVRIMCVCHGKFLSPAEFVKHAGGKNVAHPLRHIVVNPNSGPSL 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9025767 9028357 + CmaCh18G011030.1 Cma18g01103 314441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01103 364 Pfam Putative nuclear localisation signal 102 230 IPR032310 -
Cma18g01103 364 MobiDBLite consensus disorder prediction 261 276 - -
Cma18g01103 364 MobiDBLite consensus disorder prediction 193 295 - -
Cma18g01103 364 Coils Coil 118 138 - -
Cma18g01103 364 Pfam Ethylene-responsive binding factor-associated repression 48 81 IPR012463 -
Cma18g01103 364 Pfam Tify domain binding domain 322 356 IPR032308 -
Cma18g01103 364 MobiDBLite consensus disorder prediction 210 254 - -
Cma18g01103 364 PANTHER AFP HOMOLOG 2 19 360 IPR031307 GO:0007165
Cma18g01103 364 PANTHER NINJA-FAMILY PROTEIN AFP1 19 360 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01704 Cma18g01103 CCT
Cma04g01704 Cma18g01103 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00004 Cma-Chr18:9878 Cma18g01103 Cma-Chr18:9025767 1.22E-34 dispersed
Cma18g01103 Cma-Chr18:9025767 Cma19g00173 Cma-Chr19:1153102 2.09E-17 dispersed
Cma13g01072 Cma-Chr13:8107810 Cma18g01103 Cma-Chr18:9025767 5.26E-29 wgd
Cma18g01103 Cma-Chr18:9025767 Cma04g01704 Cma-Chr4:8558766 1.07E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01103 - - cmos:111450062 679.863