Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01105 ATGTGGAAAAGAGCTGTGTGTTCGATTCCTCGCAGGTTGTTTTCTTCTACACCAGAAGTCTCATCACTCTACTCCTTTCTCCAACCCTCCCTCTTCGCCACAAAGCGAGCACCATTTTCGCCATCTCAAGAATCCACCGACCTCCGTCAGAATCAAACACCTCAAAGTTTGACTACAGACCGTGTCGCCGCCGTAGAAACGACGCTCCACAAGTCCCTTCTCACCAGCGACACTGACGAGGCATGGAAATCCTTCAAACTGCTCACGAAAAGCTCCGTTTTCCCATGTAAGTCTCTCACTAATTCACTTATTGCCCACTTGTCCTCAATCGGGGACGTTCATAATCTGAAAAGAGCCTTTGCATCTGCGGTGTTTGTTATTGAAAAGAAACCCGAATTATTGGATTTTGGATCTGTCAAAACCCTATTAGCTTCTATGAAATGTGCCAACACTGCTGCCCCTGCTCTTTCTTTGATTAAATGCATGTTGAAGAATCGATGTTTTGTGCCTTTTGAGTGCTGGGGCAATGAACTTGTTAGTATTTGCAGGCAGAGTGGTAGTTTGATTCCCTTTTTAAGAGTGTTTGAAGAGATTTGTAGGATTGTTTTAAATGAGAGGTTAGATTCTATGAAACCAGATCTCAATGCGTGTAATGCAGCACTTGAGGGGTGTTGCCATGAGCTTGAATCTGTAACGGATGCCGAGCACGTCGTTGAAACGATGTCGCTTTTGAATCTTCGGCCTGATGAAGTGACTATTGGTGCTCTTGCTTATTTGTATGCACTGAAGGGGCTTGAACAGAAAATAATTGAGTTAAAATGTTTGATGGGAAGTTTTGGTTTTACATCTAAGAGTCTGTTCTTTAATAATTTGGTAAGTGGGTACGTTAATTCAGGCGACTTAGCTGCTGTTTCGAAGACTATGTTGGATGGTTTGAAAGATGAATGTGGAGAACATGTAAGATTTGAGGAAAAAACGTATTTGGAAGTGGTTAAGGCTTTTGTTCAGAGTGGAAATCTGAAGGAATTATCTTCATTGATTGTTGATGCTCAGAATTTAGAGTCTTTAACGGACGTCGATGGATCGATCGGATTCGGTATCATTAATGCTTGTGTTAATATTGGATGGTTAGATAATGTGCATGCCATTCTGAAAGAAATCAATTCCCAGGGAGTTTCTGTAGGCCTTGGAGTCTATATGCCAATCCTGAAGGCGTACCAGAAGGAGCGTCGAACAGCTGAAGCCACCCAATTAATCATGGATGTTAGCAGTTCCGGGATACAGTTGGATGCAGAAAGTTTTGATGCTCTTATAGAAGCATCGATGTCGAATCAAGATTTTCAGTCGGCTTTCGCTTTGTTCAGGAAAATGAGGGAAACGAGAAAATCCGACACGAATGCTAGCTATCTAACTATTATGACTGGCTTAATGGAGAGCCATAGGCCTGAGTTGATGGCTGCCTTCTTAGACGAAGTTGTCGAGGATCCTCTCGTTGAAGTTGGAACTCATGATTGGAACTCTATTATACATGCCTTTTGCAAAGCTGGAAGGCTCGAGGATGCGAGAAGAACGTTTCGAAGAATGAAGTTTCTGCAGTTTGAACCGAACGAACAGACGTTCTTGTCTCTAATTCATGGCTATGTGTCGGGAGAGAGATATTTTTGTGTTCTGATGCTGTGGAACGAACTTAAGTGGAAGATTACTCCAAATGGAGAGAAAGGTTTCAAACTCGATAGCAACTTGGTTGACGCGTTCTTGTATGCTTTGGTCAAGGGAGGTTTCTTCGATGCCGTGATGCAAGTTGTCGAAAAAACTAAGGATACGAAGACCTTCGTCGATAAGTGGAAATATAAGCAAGCATTCATGGAGACTCATAAGAAACTCAAAGTGGCAAAATTGAGGAGGAGGAACCACAGGAAAATGCAATCACTTATTGATTTCAAGAACTGGGTTGGTCTGAATGCTTGA 1968 42.48 MWKRAVCSIPRRLFSSTPEVSSLYSFLQPSLFATKRAPFSPSQESTDLRQNQTPQSLTTDRVAAVETTLHKSLLTSDTDEAWKSFKLLTKSSVFPCKSLTNSLIAHLSSIGDVHNLKRAFASAVFVIEKKPELLDFGSVKTLLASMKCANTAAPALSLIKCMLKNRCFVPFECWGNELVSICRQSGSLIPFLRVFEEICRIVLNERLDSMKPDLNACNAALEGCCHELESVTDAEHVVETMSLLNLRPDEVTIGALAYLYALKGLEQKIIELKCLMGSFGFTSKSLFFNNLVSGYVNSGDLAAVSKTMLDGLKDECGEHVRFEEKTYLEVVKAFVQSGNLKELSSLIVDAQNLESLTDVDGSIGFGIINACVNIGWLDNVHAILKEINSQGVSVGLGVYMPILKAYQKERRTAEATQLIMDVSSSGIQLDAESFDALIEASMSNQDFQSAFALFRKMRETRKSDTNASYLTIMTGLMESHRPELMAAFLDEVVEDPLVEVGTHDWNSIIHAFCKAGRLEDARRTFRRMKFLQFEPNEQTFLSLIHGYVSGERYFCVLMLWNELKWKITPNGEKGFKLDSNLVDAFLYALVKGGFFDAVMQVVEKTKDTKTFVDKWKYKQAFMETHKKLKVAKLRRRNHRKMQSLIDFKNWVGLNA 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9033610 9035577 - CmaCh18G011050.1 Cma18g01105 314443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01105 655 Pfam Pentatricopeptide repeat domain 418 469 IPR002885 -
Cma18g01105 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Cma18g01105 655 TIGRFAM PPR: pentatricopeptide repeat domain 505 537 IPR002885 -
Cma18g01105 655 PANTHER OS01G0788900 PROTEIN 1 655 - -
Cma18g01105 655 Gene3D Tetratricopeptide repeat domain 182 361 IPR011990 GO:0005515
Cma18g01105 655 Gene3D Tetratricopeptide repeat domain 441 651 IPR011990 GO:0005515
Cma18g01105 655 Pfam PPR repeat family 505 548 IPR002885 -
Cma18g01105 655 PANTHER BNAC05G43320D PROTEIN 1 655 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00334 Cma-Chr8:1920670 Cma18g01105 Cma-Chr18:9033610 4.98E-08 dispersed
Cma18g01105 Cma-Chr18:9033610 Cma03g00437 Cma-Chr3:4590826 2.41E-10 dispersed
Cma18g01105 Cma-Chr18:9033610 Cma14g00191 Cma-Chr14:814769 1.81E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01105 - - csv:101212045 1108.2