Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01109 ATGGCTTCGATGACTAGCGTAATACAGTCTCCGATTCGTATATGTCAGTTACCTACACTTCCATTGACTCCGAATAGAACAGTTCCTGCCAGTTCTGTCGTTGTCAAATGTCGATCACTTGCTTCTAAAGCTTTGAACACGCCGCTTTCACCGATGACGGAGAATCGAACTGTTTCCCCGTCGGTGGAGCTATGTAGCAAGGCTATCGGACTCTTAAGCTCTAGACAACCGTTGACGTCTCGTAGTGCTGTTCGTCGGCTGGTCGTGAGGGCGGCTGCAGCTGATGCCGATGGAGCTTCCGATGGGTTGACTGGCCCTTCAAAGAGCTTTGCCGCAAGATTTCCAGCACTCGTTACTGGTTTCTACTTCTTTATGTGGTACTTTTTAAATGTTATTTTCAACATACTCAACAAAAACGTCTACAATTATTTCCCATATCCATACTTTGTCTCTGTCATACATCTTCTTGTTGGAGTTGGATATTGTCTCATTTCTTGGGCTGTAGGTCTGCCAAAACGTGCTCCGATGGATAAGGAGCTCTTGCTGTTATTGACACCAGTTTCGCTATGTCATGCACTTGGACATGTGATGTCAAATGTTTCATTTGCAGCTGTTGCTGTGTCCTTCACTCACACTATCAAAGCCTTGGAGCCATTCTTTAACGCTGCTACTTCTCAATTTATTTTGGGACATCAAATTCCCTTCAGCTTGTGGCTCTCTCTAGCACCTGTTGTCTTAGGTGTGTCAATGGCATCACTAACGGAGCTTTCCTTCAACTGGACTGGCTTTGTTAGTGCAATGATTTCAAACATTGCATTCACTTATAGAAGTATCTATTCGAAGAAGGCAATGACAGGAATGGACAGTACGAACGTGTATGCATACACCTCAGTAATTGCTCTTTTGTTTTGCATTCCTCCTGCAGTAATGATCGAAGGACCGCAGCTACTGCAGCATGGTTTTAAGGATGCCATTGCCAAAGTGGGTCTCCAAAAGTTCCTGTCTGATCTTTTCTGGATTGGAATGTTTTATCATCTATACAATCAGCTTGCCACTAATACTCTTGAACGAGTTGCACCATTAACACATGCTGTAGGAAACGTATTGAAGCGAGTTTTTGTGATTGGGTTCTCCATTGTTGTTTTTGGCAATAAAATCTCAACTCAAACTGGAATTGGTACTGCTATAGCAATTGCCGGTGTCGCCATCTACTCCTTGATTAAAGCAAACTTGGAGGAGCAAAAACGGAGGGCTGCTAAAATTCCAGCATCATAG 1275 43.69 MASMTSVIQSPIRICQLPTLPLTPNRTVPASSVVVKCRSLASKALNTPLSPMTENRTVSPSVELCSKAIGLLSSRQPLTSRSAVRRLVVRAAAADADGASDGLTGPSKSFAARFPALVTGFYFFMWYFLNVIFNILNKNVYNYFPYPYFVSVIHLLVGVGYCLISWAVGLPKRAPMDKELLLLLTPVSLCHALGHVMSNVSFAAVAVSFTHTIKALEPFFNAATSQFILGHQIPFSLWLSLAPVVLGVSMASLTELSFNWTGFVSAMISNIAFTYRSIYSKKAMTGMDSTNVYAYTSVIALLFCIPPAVMIEGPQLLQHGFKDAIAKVGLQKFLSDLFWIGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIVVFGNKISTQTGIGTAIAIAGVAIYSLIKANLEEQKRRAAKIPAS 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9049595 9054703 - CmaCh18G011090.1 Cma18g01109 314447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01109 424 SUPERFAMILY Multidrug resistance efflux transporter EmrE 299 406 - -
Cma18g01109 424 PANTHER TRIOSE PHOSPHATE/PHOSPHATE TRANSLOCATOR, CHLOROPLASTIC-LIKE ISOFORM X1 67 413 - -
Cma18g01109 424 Pfam Triose-phosphate Transporter family 118 405 IPR004853 -
Cma18g01109 424 PANTHER SOLUTE CARRIER FAMILY 35 67 413 - -
Cma18g01109 424 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 117 415 IPR004696 GO:0016021|GO:0022857|GO:0055085
Cma18g01109 424 SUPERFAMILY Multidrug resistance efflux transporter EmrE 160 254 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01289 Cma-Chr3:8369310 Cma18g01109 Cma-Chr18:9049595 2.02E-150 dispersed
Cma09g00938 Cma-Chr9:4699608 Cma18g01109 Cma-Chr18:9049595 1.58E-78 dispersed
Cma16g00853 Cma-Chr16:5052238 Cma18g01109 Cma-Chr18:9049595 1.82E-75 dispersed
Cma18g00172 Cma-Chr18:873560 Cma18g01109 Cma-Chr18:9049595 7.46E-59 dispersed
Cma18g01109 Cma-Chr18:9049595 Cma07g00218 Cma-Chr7:1012179 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01109 K15283 - csv:101221040 688.337