Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01112 ATGCTTTATGCTCTGCTTCGAGATTTAAACAGAAGGCGCTTCCCATTTAGAGTGGTTCCGAACTGGATTATTGAAGGTACTTCAGAAATATTGGACATGAGAAGCTCCTGGGTCAATAAAATATCTGTAATCTTGGGCTCAAAGCCACCATTCAACTGGTTAATCTTGTGTCTCATCAGCGTGCTTGCATTAATTGTAGTTCTAGGAACGTCTACTTCAAATGCCTTTGATTCAGTTTCTACCACGCCAGTGTCTGACATTTATACTAGTTATAGAAGGCAAAAAGAAAGGGCCGCAATTGATTTGTTTGACTTAAAGTCTCTTTCATTAGCCACGGGTCGACTCAAAGAGTTTGGTCTTTGTGGAAAAGAAAGAGAAAACCATGTGCCATGTTACAATGTTACAGCAAATATGTTAGCTGGATACAAAGAAGGGGAGGAGTATGATAGGCACTGTGAAGTGTCTAGAACAGCAGAGTGTTGCCTGGTTCGTCCTCCTAAAGACTACAAGATCCCTCTGAGTTGGCCTGTTGGTAGGGATATAATATGGAGTGGGAATTTGAAGGTAACAAAAGATCAACTTCTGTCTTCTGGGAGCCCTACCAAAAGGTTGATGTTATTAGAAGAGAACCAAATTTCTTTTCACTCGGAGGATGGTGATGGAGTCAAAGAGTATTCCTTTCAAATCGCAGAGATGATTGGTTTAGGCACTGACTCTGAATTTCTTCAAGCTGGTGTACGCTCGATACTTGATATTGGTTGTGGGTTTGGTAGCTTTGGTGCTCATTTAACATCAATGAATGTAATGGTTATGTGCATTGCGACCTATGAGGCGACTGGCAGCCAAGTTCAAATGGCTCTAGAGAGAGGCCTTCCAGCGATGCTTGGCAACTTTATTGCAAAACAGCTTCCATATCCATCCTTGTCATTTGACATGGTTCACTGTGCACAATGTGAAATCTCTTGGAACGATAAAGGTGGGATATTCCTTATTGAAGCCGACCGGTTGCTAAGACCTGGAGGTTATTTTGTTTTAACCTCTCCCACAAGCAAGGCAGTCGGTGGTTCATTGTCTTCCAAGAAGATAAGCATTTTGACACCACTGGAAGAGGTTACCCGAAGATTATGTTGGACTTTTTTAGCTCAGCAGTATGAAACTTATATTTGGCAGAAAACTACAGATCCTCGTTGCTATTTATCTGGCAAGCAGGAAATTGTACCACTTTGTAAAGAAGGGCATGACACTCCATCATATTATCAACCTCTGGTACCATGCCTAAGTAGTACTACCAGCAAGCGGTGGATTCCAATCCAGAACAGGTCTTCCAGTTCTCGTTTGAGTTCAGCTGAACTTGAAGTTCATGGAAAGTATTCTTCCTTAATGGTTCTGTACTGCGTTCAATCAGAAGACTACTCTGATGACTTACAAATTTGGCGAACGGCTTTGAAAAACTATTGGTCCTTACTTACGCCTTTAATTTTCTCTGACCATCCAAAGAGGCCTGGTGATGAAGATCCATTACCTCCATTTAACATGATACGCAATGTGATGGACATGAATGCTCATTATGGGGGTTTAAATGCTGCGTTTGTGGAGCAAAAGAAAACGGTTTGGGTCATGAATGTTGTGCCTGTTGGATCTCCTAATACGCTTCCCCTCATACTTGATCAAGGTTTTGCTGGTGTTCTGCACGATTGGTGTGAACCTTTCCCCACTTATCCACGAACATATGATTTGCTCCATGCAAATGGGCTCCTCTCACAGCTACTTTCAAGTAGGTGCAGCATGATTGAATTTTTAGTCGAGATGGATCGTATACTGCGCCCTGAGGGATGGGTTATTCTAAATGACAAAGTGGGACCGATAGAGAAGGCGCGAATGCTTGTTACACATATTCGTTGGGAGGCAAGGGTGATCGACTTTCAGAATGGCAGCGACCAAAGGCTCCTTGTTTGCCAGAAACCATTAGTGAAAAAATGA 1980 42.47 MLYALLRDLNRRRFPFRVVPNWIIEGTSEILDMRSSWVNKISVILGSKPPFNWLILCLISVLALIVVLGTSTSNAFDSVSTTPVSDIYTSYRRQKERAAIDLFDLKSLSLATGRLKEFGLCGKERENHVPCYNVTANMLAGYKEGEEYDRHCEVSRTAECCLVRPPKDYKIPLSWPVGRDIIWSGNLKVTKDQLLSSGSPTKRLMLLEENQISFHSEDGDGVKEYSFQIAEMIGLGTDSEFLQAGVRSILDIGCGFGSFGAHLTSMNVMVMCIATYEATGSQVQMALERGLPAMLGNFIAKQLPYPSLSFDMVHCAQCEISWNDKGGIFLIEADRLLRPGGYFVLTSPTSKAVGGSLSSKKISILTPLEEVTRRLCWTFLAQQYETYIWQKTTDPRCYLSGKQEIVPLCKEGHDTPSYYQPLVPCLSSTTSKRWIPIQNRSSSSRLSSAELEVHGKYSSLMVLYCVQSEDYSDDLQIWRTALKNYWSLLTPLIFSDHPKRPGDEDPLPPFNMIRNVMDMNAHYGGLNAAFVEQKKTVWVMNVVPVGSPNTLPLILDQGFAGVLHDWCEPFPTYPRTYDLLHANGLLSQLLSSRCSMIEFLVEMDRILRPEGWVILNDKVGPIEKARMLVTHIRWEARVIDFQNGSDQRLLVCQKPLVKK 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9060991 9064124 - CmaCh18G011120.1 Cma18g01112 314450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01112 659 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 127 654 IPR004159 GO:0008168
Cma18g01112 659 Gene3D Vaccinia Virus protein VP39 214 393 IPR029063 -
Cma18g01112 659 PANTHER METHYLTRANSFERASE PMT4-RELATED 33 658 - -
Cma18g01112 659 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 478 639 IPR029063 -
Cma18g01112 659 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 33 658 IPR004159 GO:0008168
Cma18g01112 659 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 170 351 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01112 K23870 QUA2, TSD2; putative pectin methyltransferase [EC:2.1.1.-] - csv:101213009 1221.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00503 Cma-Chr5:2388186 Cma18g01112 Cma-Chr18:9060991 0 dispersed
Cma09g00561 Cma-Chr9:2542882 Cma18g01112 Cma-Chr18:9060991 0 dispersed
Cma18g01112 Cma-Chr18:9060991 Cma08g01080 Cma-Chr8:6739603 5.10E-102 dispersed
Cma18g01112 Cma-Chr18:9060991 Cma04g01696 Cma-Chr4:8524929 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g66 . . Bda01g02130 . . . Bma14g01641 . . Cmo18g01134 . Cma18g01112 . Car18g01026 Sed06g1770 . . Bhi07g01503 Tan04g1016 Cmetu03g1484 . . . . . . . . . . . . . . . . Csa05g02505 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004930 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01112 Cma_Chr18 FPKM 29.377777 32.667973 51.204987 49.640812 23.870472 23.209341 24.825533 12.822699 11.32285 12.147826