Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01120 ATGGGAACAAAAGTGCAGTATGAAAGTTATTTGCCAGGTTATCATTCAATGAGGGATCTGAATGAAGATTCTCATGGTTGTAGCTGGCCATTATATTATGGTGAAAAAGCGTGTCAGAGCGGCCAATATTATAATGGAATTTTTCCAAGAGCTACCTCAGATGCATATCTAGGCTGTGATAGAGATGCTGTGAAGAGGACAATGCTTGAGCATGACGCCCTATTCAGGAGCCAGGTTCGTGAACTGCATCGGTTATATATAAAACAAAGAGAGTTAATGAACGATATTAAAAGATCGGAACACAGACACCCAATGCCAATTGACATATCGTTCTCCTCTAGTCCTCTAGCATCTCAAAGTATGCCTGAGGGTGCGAGGAAATGGCATCTCCCAAGCTTTCCTCTTGCAAATTCTTCCAGTGGTAGACCATCTGCACCTTGCATTGAAGATGTAAAATCATCTTTAAGTTCTTTGAAAGAAAACAATAGAAGCGGTCTCTTACCATCCCAAAACGGAACTAGTTCAAAAGACTGCGAGGTACTAGAATCCAGACCCTCAAAGTTTCGGAGGAAAACATTCGATCTTCAACTTCCAGCAGACGAGTACGCTGATAGCGAAGAAGGGGAGGTATTTCATGATGAAAAAGTGCACCCCATGCTGGGTTGCCATTCAAATGGTAACAAGAAATGTGAGCCTCAGAGTTCTGTGAATCCTGGTGAAAAAAGTGCTGCTTTGAGATCTGACTCGAGTTTGTGGAACAAATGTGGTTTAGCTGACTTAAACGAGCCCATTCAGGTTGAAGAGGCAAATGGGTCCAATTTTTTCGATCTTCCTAGTGCTCGTGACTCCAGCAATGGGGAGACTCAAGGCCCCGTTCCGTCCTATACGAAGCAAGAAATCTTTCCGTGCTCTAGTAATGAAGGTGGACATGCAATGAATAGGAATTCGTATATTGAGAACGGAAAAAGAAGGGAGGCATTCCCCAACATCTTTAAAGCAGGTCGTAGTAAAGAGAGTGAGAAACCTTTTACTCATGGTCAGATGGAAAAGTTCCATATATCTTCTAATCCAATGCAAGTTCCACTTAACAAGTTTCATGAACTTCCAGTCTTCTATCTCAATGATAAAAGCAAGGTTCATCAGGAGTTGGACTGGCCAGTTAATGATTTGCAATTGTCCAAAAGAGGTTATGAAATGTCGAATGCTGGAGATCCCGGTTATCGTCTAGCTTCTCAGACGTCTTGTACATATCCAATCGCTCCTTCTGACATGGGCAAGTCTTGGGCTCAGTCTGGTTCGTCTTGGGAAAAGCCGAATGGCAACAGCTCCCAAAAGTCGACATTATTTCATACACAGCCGTCCTTGAAATCGTCTGCTGGCGTTCACAAGATTTTACATTCATCATCATCTCAGAATAATGGAATTTTTGGAGATAGATGGAATTTGAGTAGTGGGTCAAGATCAAACCCGGGGTCTGGTTGTGAAACTCCTTACCGGAATGGATTTTATCTCGGGCCTACCTCTGGTTCCAAAGGTACCATAAGGCATGACCATGTGACCAACTATTACAATGGCTCGGGTTGTGTGGGCACGAATTCTCCTAGAGACATTAACTTGAATGTAGTGCTCTCAAAAACCTTATCTAATGAGGCAGGTCAACAACTGAATTACAGAACCAGAGAGGCAGAACAAAAGAATGAGGACCATCATAATGTATTACCATGGTCGAGAGCTGTGCCTGCTCGTAAGAATGAAACGATCGATTCAAGAAGATTCTCTATGACTGGAGAGCTTAATTTTGTGCTCTCTCCAAAGAATCAGTTTTCAGACAGAAATGGAACTGAAAATGGCAGTAAAGTTATATGTTATCCGAACATCGAGTCGAATTCACGTTGTAGTAACATTGAGCCCAGAAGGTTGGAACATGGTGAATGCCAGAGTAACAAAAAACTTCTTGGGTTTCCCATTTTTGAAGGGCCACATGTTTCTAAGAATGAGTCGTTTTCTCTTACATCCCCGTCGGTACCTTTTCCTAATCCATCCGAGAATGACGTGAAAGATAACCAGAAAACTAGAGTATTTGATATCAATTTGCCTTCTGATCCTTCAGTTTTCGAGTCAGATAACGTTACTACTGGATCTCTGACCGTTAGAAATGGAAATGACGCGAAAATTTCTACTGTTAGAGTTAATATTGATTTGAACTCGTGTGTCGACGATGAAGAAGCATCTATGACACCTCTACCTCTGGCTTCTTCGAGTGCCAAGGAAAAGGTTGTGATAGATATAGATTTAGAAGCCCCGGCAATGCCCGAAACTGAAGACGATATCGATGCAGATGAACAGCAATCACAATCTCCTCAGCATAAGGCTGTTGATATTCAGGACGATCTTATGGCTGTTGCAGCAGATGCAATAGTTGCCATCTCTTCTTGTGGGCCTTCCTGTCATTTGAACGATAATGTTAGCAACGTGTTGGAACATTCTTCGAGCGATCTCCTAAATTGGTTTGCCGAGATCGTTTCCACACGAGGGGACGATGTACAGGTCACGTCCGATACTGTATTGAGAGCCAAAGATGACAAGAATAATGAGGAAACCGCTCTGAGAGGGATTGATTACTTTGAATACATGACATTGAGGCTAGCAGAGGTCGGTGAAGAAGACTACATGCCGAAGCCCCTGCTTCCGGAAAGTATGGAAATCGAAGCTTCTGGAACCAATTTGTTACAAAATCGACCCCGAAAGGGCCAGACGAGGAGAGGAAGGCAGCGGAGGGACTTCCAGAAGGACATCCTTCCAGGCCTTTCCTCTCTATCCAGACATGAGGTTACAGAAGATCTTCAAACATTTGGTGGCCTAATGCGAGCAACAGGCCACTCTTGGCATTGCGGAGTTACGAGGAGGAACTCTACTAGAAATGGTTGCGGTAGGGGAAGACGACGATCGGTGATCAGTCCCCCGGCCCCTGTGCATTCAGCAGCATGTAATCAGCTGATACAGCAACTAAGTAACATTGAAATGGGTCTGGAGGATGGAAGCCTGACTGGTTGGGGCAAGACAACTAGACGACCCCGTCGACAGAGATGCCCGGCTGGTAATCCTCCACCCGTTCCTTTAACTTAA 3126 43.99 MGTKVQYESYLPGYHSMRDLNEDSHGCSWPLYYGEKACQSGQYYNGIFPRATSDAYLGCDRDAVKRTMLEHDALFRSQVRELHRLYIKQRELMNDIKRSEHRHPMPIDISFSSSPLASQSMPEGARKWHLPSFPLANSSSGRPSAPCIEDVKSSLSSLKENNRSGLLPSQNGTSSKDCEVLESRPSKFRRKTFDLQLPADEYADSEEGEVFHDEKVHPMLGCHSNGNKKCEPQSSVNPGEKSAALRSDSSLWNKCGLADLNEPIQVEEANGSNFFDLPSARDSSNGETQGPVPSYTKQEIFPCSSNEGGHAMNRNSYIENGKRREAFPNIFKAGRSKESEKPFTHGQMEKFHISSNPMQVPLNKFHELPVFYLNDKSKVHQELDWPVNDLQLSKRGYEMSNAGDPGYRLASQTSCTYPIAPSDMGKSWAQSGSSWEKPNGNSSQKSTLFHTQPSLKSSAGVHKILHSSSSQNNGIFGDRWNLSSGSRSNPGSGCETPYRNGFYLGPTSGSKGTIRHDHVTNYYNGSGCVGTNSPRDINLNVVLSKTLSNEAGQQLNYRTREAEQKNEDHHNVLPWSRAVPARKNETIDSRRFSMTGELNFVLSPKNQFSDRNGTENGSKVICYPNIESNSRCSNIEPRRLEHGECQSNKKLLGFPIFEGPHVSKNESFSLTSPSVPFPNPSENDVKDNQKTRVFDINLPSDPSVFESDNVTTGSLTVRNGNDAKISTVRVNIDLNSCVDDEEASMTPLPLASSSAKEKVVIDIDLEAPAMPETEDDIDADEQQSQSPQHKAVDIQDDLMAVAADAIVAISSCGPSCHLNDNVSNVLEHSSSDLLNWFAEIVSTRGDDVQVTSDTVLRAKDDKNNEETALRGIDYFEYMTLRLAEVGEEDYMPKPLLPESMEIEASGTNLLQNRPRKGQTRRGRQRRDFQKDILPGLSSLSRHEVTEDLQTFGGLMRATGHSWHCGVTRRNSTRNGCGRGRRRSVISPPAPVHSAACNQLIQQLSNIEMGLEDGSLTGWGKTTRRPRRQRCPAGNPPPVPLT 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9092224 9098243 - CmaCh18G011200.1 Cma18g01120 314458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01120 1041 Pfam Plant protein of unknown function (DUF863) 142 1031 IPR008581 -
Cma18g01120 1041 MobiDBLite consensus disorder prediction 227 243 - -
Cma18g01120 1041 MobiDBLite consensus disorder prediction 276 296 - -
Cma18g01120 1041 PANTHER - 1 1040 - -
Cma18g01120 1041 MobiDBLite consensus disorder prediction 1012 1041 - -
Cma18g01120 1041 PANTHER TRANSCRIPTION FACTOR, PUTATIVE (DUF863)-RELATED 1 1040 - -
Cma18g01120 1041 MobiDBLite consensus disorder prediction 427 453 - -
Cma18g01120 1041 MobiDBLite consensus disorder prediction 273 296 - -
Cma18g01120 1041 MobiDBLite consensus disorder prediction 905 926 - -
Cma18g01120 1041 MobiDBLite consensus disorder prediction 223 243 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01120 - - - bhj:120080916 1715.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01688 Cma18g01120 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00438 Cma-Chr5:1998664 Cma18g01120 Cma-Chr18:9092224 5.57E-153 dispersed
Cma11g00370 Cma-Chr11:1847115 Cma18g01120 Cma-Chr18:9092224 3.11E-06 dispersed
Cma12g00092 Cma-Chr12:363420 Cma18g01120 Cma-Chr18:9092224 1.15E-50 dispersed
Cma01g00808 Cma-Chr1:4352380 Cma18g01120 Cma-Chr18:9092224 3.55E-06 wgd
Cma13g01091 Cma-Chr13:8217615 Cma18g01120 Cma-Chr18:9092224 5.45E-14 wgd
Cma18g01120 Cma-Chr18:9092224 Cma04g01688 Cma-Chr4:8494575 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g80 Blo01g00444 . Bda01g02136 . . Bpe10g00891 . Bma15g00139 Cmo04g01769 Cmo18g01141 . Cma18g01120 . Car18g01032 Sed06g1491 Cpe09g00208 Cpe01g01494 Bhi07g01518 Tan04g1031 Cmetu10g0795 Lac13g0357 Hepe10g1779 . . Cla05g02409 Cam05g2586 Cec05g2618 Cco05g2658 Clacu05g2588 Cmu05g2442 Cre05g2559 . . Cone6ag0549 Cone9ag0559 Lsi04g00380 Csa05g02495 Chy10g01043 Cme10g00377 . Blo11g00790 . . . Bpe02g02325 Bma01g00114 . . . . Cma04g01688 . Car04g01725 . . Cpe07g00079 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001421 1 6 2 3 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 8 3 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01120 Cma_Chr18 FPKM 10.188926 10.85302 12.096618 12.334282 8.538229 7.291339 8.138073 14.564904 12.284184 12.873575