Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma18g01120 | ATGGGAACAAAAGTGCAGTATGAAAGTTATTTGCCAGGTTATCATTCAATGAGGGATCTGAATGAAGATTCTCATGGTTGTAGCTGGCCATTATATTATGGTGAAAAAGCGTGTCAGAGCGGCCAATATTATAATGGAATTTTTCCAAGAGCTACCTCAGATGCATATCTAGGCTGTGATAGAGATGCTGTGAAGAGGACAATGCTTGAGCATGACGCCCTATTCAGGAGCCAGGTTCGTGAACTGCATCGGTTATATATAAAACAAAGAGAGTTAATGAACGATATTAAAAGATCGGAACACAGACACCCAATGCCAATTGACATATCGTTCTCCTCTAGTCCTCTAGCATCTCAAAGTATGCCTGAGGGTGCGAGGAAATGGCATCTCCCAAGCTTTCCTCTTGCAAATTCTTCCAGTGGTAGACCATCTGCACCTTGCATTGAAGATGTAAAATCATCTTTAAGTTCTTTGAAAGAAAACAATAGAAGCGGTCTCTTACCATCCCAAAACGGAACTAGTTCAAAAGACTGCGAGGTACTAGAATCCAGACCCTCAAAGTTTCGGAGGAAAACATTCGATCTTCAACTTCCAGCAGACGAGTACGCTGATAGCGAAGAAGGGGAGGTATTTCATGATGAAAAAGTGCACCCCATGCTGGGTTGCCATTCAAATGGTAACAAGAAATGTGAGCCTCAGAGTTCTGTGAATCCTGGTGAAAAAAGTGCTGCTTTGAGATCTGACTCGAGTTTGTGGAACAAATGTGGTTTAGCTGACTTAAACGAGCCCATTCAGGTTGAAGAGGCAAATGGGTCCAATTTTTTCGATCTTCCTAGTGCTCGTGACTCCAGCAATGGGGAGACTCAAGGCCCCGTTCCGTCCTATACGAAGCAAGAAATCTTTCCGTGCTCTAGTAATGAAGGTGGACATGCAATGAATAGGAATTCGTATATTGAGAACGGAAAAAGAAGGGAGGCATTCCCCAACATCTTTAAAGCAGGTCGTAGTAAAGAGAGTGAGAAACCTTTTACTCATGGTCAGATGGAAAAGTTCCATATATCTTCTAATCCAATGCAAGTTCCACTTAACAAGTTTCATGAACTTCCAGTCTTCTATCTCAATGATAAAAGCAAGGTTCATCAGGAGTTGGACTGGCCAGTTAATGATTTGCAATTGTCCAAAAGAGGTTATGAAATGTCGAATGCTGGAGATCCCGGTTATCGTCTAGCTTCTCAGACGTCTTGTACATATCCAATCGCTCCTTCTGACATGGGCAAGTCTTGGGCTCAGTCTGGTTCGTCTTGGGAAAAGCCGAATGGCAACAGCTCCCAAAAGTCGACATTATTTCATACACAGCCGTCCTTGAAATCGTCTGCTGGCGTTCACAAGATTTTACATTCATCATCATCTCAGAATAATGGAATTTTTGGAGATAGATGGAATTTGAGTAGTGGGTCAAGATCAAACCCGGGGTCTGGTTGTGAAACTCCTTACCGGAATGGATTTTATCTCGGGCCTACCTCTGGTTCCAAAGGTACCATAAGGCATGACCATGTGACCAACTATTACAATGGCTCGGGTTGTGTGGGCACGAATTCTCCTAGAGACATTAACTTGAATGTAGTGCTCTCAAAAACCTTATCTAATGAGGCAGGTCAACAACTGAATTACAGAACCAGAGAGGCAGAACAAAAGAATGAGGACCATCATAATGTATTACCATGGTCGAGAGCTGTGCCTGCTCGTAAGAATGAAACGATCGATTCAAGAAGATTCTCTATGACTGGAGAGCTTAATTTTGTGCTCTCTCCAAAGAATCAGTTTTCAGACAGAAATGGAACTGAAAATGGCAGTAAAGTTATATGTTATCCGAACATCGAGTCGAATTCACGTTGTAGTAACATTGAGCCCAGAAGGTTGGAACATGGTGAATGCCAGAGTAACAAAAAACTTCTTGGGTTTCCCATTTTTGAAGGGCCACATGTTTCTAAGAATGAGTCGTTTTCTCTTACATCCCCGTCGGTACCTTTTCCTAATCCATCCGAGAATGACGTGAAAGATAACCAGAAAACTAGAGTATTTGATATCAATTTGCCTTCTGATCCTTCAGTTTTCGAGTCAGATAACGTTACTACTGGATCTCTGACCGTTAGAAATGGAAATGACGCGAAAATTTCTACTGTTAGAGTTAATATTGATTTGAACTCGTGTGTCGACGATGAAGAAGCATCTATGACACCTCTACCTCTGGCTTCTTCGAGTGCCAAGGAAAAGGTTGTGATAGATATAGATTTAGAAGCCCCGGCAATGCCCGAAACTGAAGACGATATCGATGCAGATGAACAGCAATCACAATCTCCTCAGCATAAGGCTGTTGATATTCAGGACGATCTTATGGCTGTTGCAGCAGATGCAATAGTTGCCATCTCTTCTTGTGGGCCTTCCTGTCATTTGAACGATAATGTTAGCAACGTGTTGGAACATTCTTCGAGCGATCTCCTAAATTGGTTTGCCGAGATCGTTTCCACACGAGGGGACGATGTACAGGTCACGTCCGATACTGTATTGAGAGCCAAAGATGACAAGAATAATGAGGAAACCGCTCTGAGAGGGATTGATTACTTTGAATACATGACATTGAGGCTAGCAGAGGTCGGTGAAGAAGACTACATGCCGAAGCCCCTGCTTCCGGAAAGTATGGAAATCGAAGCTTCTGGAACCAATTTGTTACAAAATCGACCCCGAAAGGGCCAGACGAGGAGAGGAAGGCAGCGGAGGGACTTCCAGAAGGACATCCTTCCAGGCCTTTCCTCTCTATCCAGACATGAGGTTACAGAAGATCTTCAAACATTTGGTGGCCTAATGCGAGCAACAGGCCACTCTTGGCATTGCGGAGTTACGAGGAGGAACTCTACTAGAAATGGTTGCGGTAGGGGAAGACGACGATCGGTGATCAGTCCCCCGGCCCCTGTGCATTCAGCAGCATGTAATCAGCTGATACAGCAACTAAGTAACATTGAAATGGGTCTGGAGGATGGAAGCCTGACTGGTTGGGGCAAGACAACTAGACGACCCCGTCGACAGAGATGCCCGGCTGGTAATCCTCCACCCGTTCCTTTAACTTAA | 3126 | 43.99 | MGTKVQYESYLPGYHSMRDLNEDSHGCSWPLYYGEKACQSGQYYNGIFPRATSDAYLGCDRDAVKRTMLEHDALFRSQVRELHRLYIKQRELMNDIKRSEHRHPMPIDISFSSSPLASQSMPEGARKWHLPSFPLANSSSGRPSAPCIEDVKSSLSSLKENNRSGLLPSQNGTSSKDCEVLESRPSKFRRKTFDLQLPADEYADSEEGEVFHDEKVHPMLGCHSNGNKKCEPQSSVNPGEKSAALRSDSSLWNKCGLADLNEPIQVEEANGSNFFDLPSARDSSNGETQGPVPSYTKQEIFPCSSNEGGHAMNRNSYIENGKRREAFPNIFKAGRSKESEKPFTHGQMEKFHISSNPMQVPLNKFHELPVFYLNDKSKVHQELDWPVNDLQLSKRGYEMSNAGDPGYRLASQTSCTYPIAPSDMGKSWAQSGSSWEKPNGNSSQKSTLFHTQPSLKSSAGVHKILHSSSSQNNGIFGDRWNLSSGSRSNPGSGCETPYRNGFYLGPTSGSKGTIRHDHVTNYYNGSGCVGTNSPRDINLNVVLSKTLSNEAGQQLNYRTREAEQKNEDHHNVLPWSRAVPARKNETIDSRRFSMTGELNFVLSPKNQFSDRNGTENGSKVICYPNIESNSRCSNIEPRRLEHGECQSNKKLLGFPIFEGPHVSKNESFSLTSPSVPFPNPSENDVKDNQKTRVFDINLPSDPSVFESDNVTTGSLTVRNGNDAKISTVRVNIDLNSCVDDEEASMTPLPLASSSAKEKVVIDIDLEAPAMPETEDDIDADEQQSQSPQHKAVDIQDDLMAVAADAIVAISSCGPSCHLNDNVSNVLEHSSSDLLNWFAEIVSTRGDDVQVTSDTVLRAKDDKNNEETALRGIDYFEYMTLRLAEVGEEDYMPKPLLPESMEIEASGTNLLQNRPRKGQTRRGRQRRDFQKDILPGLSSLSRHEVTEDLQTFGGLMRATGHSWHCGVTRRNSTRNGCGRGRRRSVISPPAPVHSAACNQLIQQLSNIEMGLEDGSLTGWGKTTRRPRRQRCPAGNPPPVPLT | 1041 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 9092224 | 9098243 | - | CmaCh18G011200.1 | Cma18g01120 | 314458 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma18g01120 | 1041 | Pfam | Plant protein of unknown function (DUF863) | 142 | 1031 | IPR008581 | - | |
| Cma18g01120 | 1041 | MobiDBLite | consensus disorder prediction | 227 | 243 | - | - | |
| Cma18g01120 | 1041 | MobiDBLite | consensus disorder prediction | 276 | 296 | - | - | |
| Cma18g01120 | 1041 | PANTHER | - | 1 | 1040 | - | - | |
| Cma18g01120 | 1041 | MobiDBLite | consensus disorder prediction | 1012 | 1041 | - | - | |
| Cma18g01120 | 1041 | PANTHER | TRANSCRIPTION FACTOR, PUTATIVE (DUF863)-RELATED | 1 | 1040 | - | - | |
| Cma18g01120 | 1041 | MobiDBLite | consensus disorder prediction | 427 | 453 | - | - | |
| Cma18g01120 | 1041 | MobiDBLite | consensus disorder prediction | 273 | 296 | - | - | |
| Cma18g01120 | 1041 | MobiDBLite | consensus disorder prediction | 905 | 926 | - | - | |
| Cma18g01120 | 1041 | MobiDBLite | consensus disorder prediction | 223 | 243 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma04g01688 | Cma18g01120 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma05g00438 | Cma-Chr5:1998664 | Cma18g01120 | Cma-Chr18:9092224 | 5.57E-153 | dispersed | |
| Cma11g00370 | Cma-Chr11:1847115 | Cma18g01120 | Cma-Chr18:9092224 | 3.11E-06 | dispersed | |
| Cma12g00092 | Cma-Chr12:363420 | Cma18g01120 | Cma-Chr18:9092224 | 1.15E-50 | dispersed | |
| Cma01g00808 | Cma-Chr1:4352380 | Cma18g01120 | Cma-Chr18:9092224 | 3.55E-06 | wgd | |
| Cma13g01091 | Cma-Chr13:8217615 | Cma18g01120 | Cma-Chr18:9092224 | 5.45E-14 | wgd | |
| Cma18g01120 | Cma-Chr18:9092224 | Cma04g01688 | Cma-Chr4:8494575 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma18g01120 | - | - | bhj:120080916 | 1715.28 |