Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma18g01123 | ATGGGTGATGATGAAGATAAGCTGCCACCGTCGTCGGTGCCGTCGCCGTTGAAATCTAAAGCTTTTCCGTTGCGGCCCACTATTAATCTGCCGCCACGGACCTCTATGGAGTCGCTCTTAAGCGGTGGGCCGGGTTTGGGACTCGGGTTTAGCCCAGGACCCATGACCCTTGTCTCGAGCTTCTTCTCCGATTCCGATGACTGCAAGTCTTTTTCTCAGCTTCTCGCCGGTGCTATGACGTCGCCGGTGGCTGTTCCTCCGACGGCGTCCGAGCTTAAGGACTCTGCTGGTCTGCCCGATTCTCCGGGGCTTTTCTCGCCTGATCAGGGAACTTTTGGATTGACCCATCAGCAGGCTTTGGCTCAGGTTACCCTGCAGGCTGTTGAAGCCTATTCTCATAAGCAAATACAAGCACACTCAGTTGCAGGCTCGGCAGCCTCCTCAAAGCTTTTGACCGTATTTCCGAGCGAGAAGGCTAAAGATCAGCCAGTGCCACTACAATTCTTGAACTCTGCAGTCGTGTCGAAGGAGTCGTCGGATATCTCTCAATCCGATCAGAGATTGGTTTCTTCTTCGTGTAATGCCGATAGGCCTGCTGATGATGGGTACAATTGGAGGAAATATGGGCAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGCTACTACAAGTGCACGTACCCGAATTGTCCTGTCAAGAAAAAGGTCGAACGATCTCTGGAAGGCCACATTACTGAAATTATTTATAAGGGTGAACACAACCACGAACGACCTCAACCAAACAAGCGTGCAAAGGATGTTGGAAATTCTAATGGATATTCAAGTGTTCATGGAAACACTGACCTATATTCTCAAATAAAGAGTGGATTGAATAAGTTGAATGAGCAGTCAGCTGTGTCTTCCGTTGTGAAGAAGGATCGAGAATCGAACCTCGTTACACATGGACAGTTGTTGGATGCTAGTGACAGTGAGGGAGGGGGTGAGGTAGAAACTGGACCGAATAGAAACGATGAAGACGAACCGGCTGCCAAGAGAAGGAACACCGAGGCTCGGGTCGAGCCAGTGTCTTCTCATAGGACGCTCACAGAATCCCGAATCATTGTGCAGACTACAAGTGAAGTCGATTTGTTGGACGATGGCTACCGGTGGCGAAAGTATGGGCAGAAAACGGTTAAAGGCAACCCTTACCCCAGGAGCTATTATAAATGCACGACTCTCGGATGCAATGTTCGTAAACATGTCGAGAGAGCTTCAACAGACCAGAAAGCTGTGATAACGACGTATGAGGGCAAACACAATCACGACGTTCCAGCCGGTAAAATCAGCAGCCACGGTACAGCCAACAGTAACGTTCCTGGGCTAAAATCACAAAATACAGCTACTGAGAAAGACTTCTGCTGTTAA | 1404 | 49.29 | MGDDEDKLPPSSVPSPLKSKAFPLRPTINLPPRTSMESLLSGGPGLGLGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMTSPVAVPPTASELKDSAGLPDSPGLFSPDQGTFGLTHQQALAQVTLQAVEAYSHKQIQAHSVAGSAASSKLLTVFPSEKAKDQPVPLQFLNSAVVSKESSDISQSDQRLVSSSCNADRPADDGYNWRKYGQKQVKGSEFPRSYYKCTYPNCPVKKKVERSLEGHITEIIYKGEHNHERPQPNKRAKDVGNSNGYSSVHGNTDLYSQIKSGLNKLNEQSAVSSVVKKDRESNLVTHGQLLDASDSEGGGEVETGPNRNDEDEPAAKRRNTEARVEPVSSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKTVKGNPYPRSYYKCTTLGCNVRKHVERASTDQKAVITTYEGKHNHDVPAGKISSHGTANSNVPGLKSQNTATEKDFCC | 467 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 9120796 | 9124471 | + | CmaCh18G011230.1 | Cma18g01123 | 314461 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma18g01123 | 467 | MobiDBLite | consensus disorder prediction | 179 | 204 | - | - | |
Cma18g01123 | 467 | MobiDBLite | consensus disorder prediction | 249 | 280 | - | - | |
Cma18g01123 | 467 | MobiDBLite | consensus disorder prediction | 84 | 110 | - | - | |
Cma18g01123 | 467 | SUPERFAMILY | WRKY DNA-binding domain | 369 | 437 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma18g01123 | 467 | ProSiteProfiles | WRKY domain profile. | 194 | 258 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma18g01123 | 467 | Pfam | WRKY DNA -binding domain | 378 | 434 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma18g01123 | 467 | Pfam | WRKY DNA -binding domain | 200 | 256 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma18g01123 | 467 | MobiDBLite | consensus disorder prediction | 179 | 193 | - | - | |
Cma18g01123 | 467 | PANTHER | WRKY TRANSCRIPTION FACTOR 58-RELATED | 20 | 461 | - | - | |
Cma18g01123 | 467 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Cma18g01123 | 467 | SUPERFAMILY | WRKY DNA-binding domain | 197 | 258 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma18g01123 | 467 | MobiDBLite | consensus disorder prediction | 331 | 357 | - | - | |
Cma18g01123 | 467 | MobiDBLite | consensus disorder prediction | 264 | 280 | - | - | |
Cma18g01123 | 467 | Gene3D | WRKY domain | 362 | 438 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma18g01123 | 467 | Gene3D | WRKY domain | 184 | 259 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma18g01123 | 467 | SMART | WRKY_cls | 199 | 257 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma18g01123 | 467 | SMART | WRKY_cls | 377 | 436 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma18g01123 | 467 | ProSiteProfiles | WRKY domain profile. | 372 | 437 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma18g01123 | 467 | MobiDBLite | consensus disorder prediction | 301 | 357 | - | - | |
Cma18g01123 | 467 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 20 | 461 | IPR044810 | GO:0003700 | |
Cma18g01123 | 467 | MobiDBLite | consensus disorder prediction | 249 | 263 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma16g00995 | Cma-Chr16:7656778 | Cma18g01123 | Cma-Chr18:9120796 | 3.44E-15 | dispersed | |
Cma18g01123 | Cma-Chr18:9120796 | Cma01g00711 | Cma-Chr1:3726739 | 1.71E-79 | dispersed | |
Cma15g00248 | Cma-Chr15:1187701 | Cma18g01123 | Cma-Chr18:9120796 | 4.60E-134 | wgd | |
Cma18g01123 | Cma-Chr18:9120796 | Cma04g01684 | Cma-Chr4:8477538 | 0 | wgd | |
Cma18g01123 | Cma-Chr18:9120796 | Cma04g02787 | Cma-Chr4:18688997 | 1.56E-126 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36822 | PF03106 | WRKY | 5.50E-25 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma18g01123 | - | - | cmo:103489160 | 685.641 |