Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01123 ATGGGTGATGATGAAGATAAGCTGCCACCGTCGTCGGTGCCGTCGCCGTTGAAATCTAAAGCTTTTCCGTTGCGGCCCACTATTAATCTGCCGCCACGGACCTCTATGGAGTCGCTCTTAAGCGGTGGGCCGGGTTTGGGACTCGGGTTTAGCCCAGGACCCATGACCCTTGTCTCGAGCTTCTTCTCCGATTCCGATGACTGCAAGTCTTTTTCTCAGCTTCTCGCCGGTGCTATGACGTCGCCGGTGGCTGTTCCTCCGACGGCGTCCGAGCTTAAGGACTCTGCTGGTCTGCCCGATTCTCCGGGGCTTTTCTCGCCTGATCAGGGAACTTTTGGATTGACCCATCAGCAGGCTTTGGCTCAGGTTACCCTGCAGGCTGTTGAAGCCTATTCTCATAAGCAAATACAAGCACACTCAGTTGCAGGCTCGGCAGCCTCCTCAAAGCTTTTGACCGTATTTCCGAGCGAGAAGGCTAAAGATCAGCCAGTGCCACTACAATTCTTGAACTCTGCAGTCGTGTCGAAGGAGTCGTCGGATATCTCTCAATCCGATCAGAGATTGGTTTCTTCTTCGTGTAATGCCGATAGGCCTGCTGATGATGGGTACAATTGGAGGAAATATGGGCAGAAACAAGTGAAGGGCAGTGAATTTCCTCGAAGCTACTACAAGTGCACGTACCCGAATTGTCCTGTCAAGAAAAAGGTCGAACGATCTCTGGAAGGCCACATTACTGAAATTATTTATAAGGGTGAACACAACCACGAACGACCTCAACCAAACAAGCGTGCAAAGGATGTTGGAAATTCTAATGGATATTCAAGTGTTCATGGAAACACTGACCTATATTCTCAAATAAAGAGTGGATTGAATAAGTTGAATGAGCAGTCAGCTGTGTCTTCCGTTGTGAAGAAGGATCGAGAATCGAACCTCGTTACACATGGACAGTTGTTGGATGCTAGTGACAGTGAGGGAGGGGGTGAGGTAGAAACTGGACCGAATAGAAACGATGAAGACGAACCGGCTGCCAAGAGAAGGAACACCGAGGCTCGGGTCGAGCCAGTGTCTTCTCATAGGACGCTCACAGAATCCCGAATCATTGTGCAGACTACAAGTGAAGTCGATTTGTTGGACGATGGCTACCGGTGGCGAAAGTATGGGCAGAAAACGGTTAAAGGCAACCCTTACCCCAGGAGCTATTATAAATGCACGACTCTCGGATGCAATGTTCGTAAACATGTCGAGAGAGCTTCAACAGACCAGAAAGCTGTGATAACGACGTATGAGGGCAAACACAATCACGACGTTCCAGCCGGTAAAATCAGCAGCCACGGTACAGCCAACAGTAACGTTCCTGGGCTAAAATCACAAAATACAGCTACTGAGAAAGACTTCTGCTGTTAA 1404 49.29 MGDDEDKLPPSSVPSPLKSKAFPLRPTINLPPRTSMESLLSGGPGLGLGFSPGPMTLVSSFFSDSDDCKSFSQLLAGAMTSPVAVPPTASELKDSAGLPDSPGLFSPDQGTFGLTHQQALAQVTLQAVEAYSHKQIQAHSVAGSAASSKLLTVFPSEKAKDQPVPLQFLNSAVVSKESSDISQSDQRLVSSSCNADRPADDGYNWRKYGQKQVKGSEFPRSYYKCTYPNCPVKKKVERSLEGHITEIIYKGEHNHERPQPNKRAKDVGNSNGYSSVHGNTDLYSQIKSGLNKLNEQSAVSSVVKKDRESNLVTHGQLLDASDSEGGGEVETGPNRNDEDEPAAKRRNTEARVEPVSSHRTLTESRIIVQTTSEVDLLDDGYRWRKYGQKTVKGNPYPRSYYKCTTLGCNVRKHVERASTDQKAVITTYEGKHNHDVPAGKISSHGTANSNVPGLKSQNTATEKDFCC 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9120796 9124471 + CmaCh18G011230.1 Cma18g01123 314461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01123 467 MobiDBLite consensus disorder prediction 179 204 - -
Cma18g01123 467 MobiDBLite consensus disorder prediction 249 280 - -
Cma18g01123 467 MobiDBLite consensus disorder prediction 84 110 - -
Cma18g01123 467 SUPERFAMILY WRKY DNA-binding domain 369 437 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma18g01123 467 ProSiteProfiles WRKY domain profile. 194 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma18g01123 467 Pfam WRKY DNA -binding domain 378 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma18g01123 467 Pfam WRKY DNA -binding domain 200 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma18g01123 467 MobiDBLite consensus disorder prediction 179 193 - -
Cma18g01123 467 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 20 461 - -
Cma18g01123 467 MobiDBLite consensus disorder prediction 1 36 - -
Cma18g01123 467 SUPERFAMILY WRKY DNA-binding domain 197 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma18g01123 467 MobiDBLite consensus disorder prediction 331 357 - -
Cma18g01123 467 MobiDBLite consensus disorder prediction 264 280 - -
Cma18g01123 467 Gene3D WRKY domain 362 438 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma18g01123 467 Gene3D WRKY domain 184 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma18g01123 467 SMART WRKY_cls 199 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma18g01123 467 SMART WRKY_cls 377 436 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma18g01123 467 ProSiteProfiles WRKY domain profile. 372 437 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma18g01123 467 MobiDBLite consensus disorder prediction 301 357 - -
Cma18g01123 467 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 20 461 IPR044810 GO:0003700
Cma18g01123 467 MobiDBLite consensus disorder prediction 249 263 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00995 Cma-Chr16:7656778 Cma18g01123 Cma-Chr18:9120796 3.44E-15 dispersed
Cma18g01123 Cma-Chr18:9120796 Cma01g00711 Cma-Chr1:3726739 1.71E-79 dispersed
Cma15g00248 Cma-Chr15:1187701 Cma18g01123 Cma-Chr18:9120796 4.60E-134 wgd
Cma18g01123 Cma-Chr18:9120796 Cma04g01684 Cma-Chr4:8477538 0 wgd
Cma18g01123 Cma-Chr18:9120796 Cma04g02787 Cma-Chr4:18688997 1.56E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36822 PF03106 WRKY 5.50E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01123 - - cmo:103489160 685.641