Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01127 ATGAGCTTACCTTCCGGGAGTGCCGCCGGTTTTCCAACGCCGGGGAATTCAGGAGGTAAGGGAAACTCCTCGTCGTCATTGGCATCGGGGACGAGCAAGGAGAAGCAGAAGGAGAAAGCGAGAGTTAGTAGAACGTCGATGATATTGTGGCACGCTCACCAAAATGATCCTGCTGCTGTTCGCAAACTTCTGGAGGAGGATCAGTCCCTTGTCCATGCTAGAGATTACGACAACCGCACCCCTCTCCATGTTGCATCGCTTCATGGCTGGATCGACGTTGCCAAGTGTTTGATTGAACACGGCGCTGATGTTAATGCCCAAGATCGCTGGAAGAATACTCCGCTAGCTGATGCAGAAGGAGCTAAAAAGCATGGCATGATTGAGTTATTAAAATCATATGGTGGCCTTTCCTATGGCCAAAATGGAAGCCATTTTGAACCGAAGCCTGTTCCTCCTCCTCTGCCAAATAAATGTGACTGGGAAATTGATCCCACGGAACTAGATTTTTCTAACTCAGCTATTATCGGCAAGGGGTCCTTCGGGGAAATTTTGAAGGCCTACTGGCGTGGAACCCCTGTAGCTGTCAAACGTATCCTTCCATCACTATCTGATGACAGACTTGTGATTCAGGATTTTCGACATGAGGTTAATCTCTTGGTGAAACTACGCCACCCGAACATAGTCCAATTTCTTGGAGCTGTCACTGATAAGAAACCACTTATGTTAGTCACTGAATACTTAAGAGGGGGTGATCTTCACCAGTACCTCAAGGATAAAGGTTCACTCAGTCCTTCAACGGCCATCAATTTTGCACTGGACATTGCCAGGGGAATGGCTTATCTCCACAATGAACCAAATGTTATAATTCACCGTGACCTAAAACCAAGGAACGTTCTGTTGGTTAATTCCGGAGCCGACCATCTAAAAGTTGGTGATTTTGGTCTAAGCAAACTCATCAAGGTTCAGAATTCACATGATGTTTACAAAATGACTGGCGAGACTGGGAGCTACCGGTATATGGCTCCTGAAGTATTTAAGCACAGAAAATATGATAAGAAGGTGGACGTGTTTTCTTTTGCAATGATATTATACGAGATGCTTGAGGGAGATCCACCACTGGCAAATTATGAGCCTTATGAAGCTGCCAAATATGTGGCTGAAGGTCATCGACCGATGTTCCATTCGAAAGGATACCTTCCCGTTCTAAGGGAGGATCGGCCTGTCATCGTGTTTTTGAGCTTCAAAACCTTCTTCAAGCAACCCAGGTTCATGAGCTTATCCCATGCCTTGTGCCTGCGGCGGAATTTAAACATTTGGTCCAAAAATCTCGGCCATGGCGTATCTTCAGATGATCAAAAGCTACTTTTTCTACTGAAATCATGCAATGGAACTTCAGATATCTCTCAAATCCACTGCTACATGGTCAAGACTGCTCTTGACCTCGTCCCTTTCACATTAAGCAAACTTCTTGCTTCCACCATACTGGATATCAATTATGCAGCTTCCATTTTCAAGGTTATACGAAACCCGAATCTCTTTATGTTCAATACTATGCTTAGAGGCTATTCTAATAGCGACGATTCAAAACAAGCTTTTGTTATTTTCAATGACCTGAGGAATCAGGACTTCTTGCCTGATGAGTTCTCTTTCATAACAATTCTGAAAGCCTGTGCTCGAGAATTAGCAATTAATTCTGGGCAGGGGATTCATGGGATTGTTCATAGATCTGGGCATGGTTTATTCAGTCATCTAAATAACATGCTTCTACATTTTTACTGCGCGTGTGGCCAAATTGGAGATGCCCGTAAACTGTTTGATGAAATTCCTCAAAGAAACGACTTGGTATCGTGGAATACTTTGATGGGTGGTTATCTTCATGCATCTCAGCCCACTGTTGTTTTAGATTTTTTTAGACAAATGTGTAGGAGAGGTTTGATCGCCGGCGCTTATACAGTATTAACTGTTTCATCTGCTGTGGGTGATGTCGGCTATTCCTTAGATGGAAGGTCTCTTCATGGACAATGTATTAAGCTGGGTTTATGTTCTGATCTCAATGTGGTTACTTGTTTGATTAATATGTATGCAAAATTTAAAGATTTGGAATCAGGACAGCTGATCTTTGATGAAGTTGCTGAGAAGGATGTTGTTCTCTGGAATTGTTTGATAGATAACTATGCTAGAAATGGCATGTTAGAAATCGCTATAGATTCACTTCATCTCATGAAACATGAAGGAAAGCAACCCAATTCATCCACATTGGCAGGATTACTTTCAGCTTGTTCTACGTTCGGTGCTGTTGGTACAGGTAAATACCTTGGCCATTATGTGGAGGAGGAAGGACTTGTTCTAGATACTGCTCTTGGAACAGCTCTAATTGATATGTATGCTAAATGTGGGTTCCTAGACAAGGCGATCGACATTTTCGATAAGATAAAGGATAAAGATGTAAAGACTTGGACCGCCATGATCACTGGTTATGGGGCTCATGGTCAGACAAGGAAGGCTATTGACACTTTGTTTAGGATGGAGGAGGAGGGTTTTAGGCCCAACGAAATAACTTTCTTGGCTGTCTTGAATGCTTGTAGTCATGGAGGCATAGTGATAGAGGGTATGAGATGTTTCAAGAGAATGGTGTATGAATATCGAATGACACCAAAGATTGAGCACTATGGATGCATTATTGATCTTCTTGGTCGTGCAGGGTTGTTGGAGGAAGCTCATAAGCTAATCAAGAGCTTGCCTTCCGAGGGCGATATAACGGGTTGGCGTGCGCTGCTGGCAGCCTGTAGGGTATATGGAGATGTTGAACTGGGAGAGTCTGCGATGAGAATGCTAGTTGATTTAAACGATGAACACCCCACGGATTCAATGCTCCTGTCTAGTACATATGCCGTTGCTGGGAGACTGTCTGATTATACACAGTATCAGCAAATTGAGGAAGAAAACAGAATGAAAGAAGGAATTAGATCATCTCAAATGCAAACTGAGAAGGCAAGAAAAGAAGCTGGTCGTAGTCTCGTTTGTTCGTATCTGCTTCAGCATTTTGGTTTGGACATTTTTGATCCAGATCGTTGCATTTGGGAAGCTATGGCATCCCCATTTTATATCCAATATAGCCAATCGGATTTCGCAAGTGACTGGGATTCCGCTCTCTCTTCACGTCGACGAGTCCATCCAATCGACGCCATTTCTTCCAGCTAG 3201 43.42 MSLPSGSAAGFPTPGNSGGKGNSSSSLASGTSKEKQKEKARVSRTSMILWHAHQNDPAAVRKLLEEDQSLVHARDYDNRTPLHVASLHGWIDVAKCLIEHGADVNAQDRWKNTPLADAEGAKKHGMIELLKSYGGLSYGQNGSHFEPKPVPPPLPNKCDWEIDPTELDFSNSAIIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTDKKPLMLVTEYLRGGDLHQYLKDKGSLSPSTAINFALDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSGADHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKYVAEGHRPMFHSKGYLPVLREDRPVIVFLSFKTFFKQPRFMSLSHALCLRRNLNIWSKNLGHGVSSDDQKLLFLLKSCNGTSDISQIHCYMVKTALDLVPFTLSKLLASTILDINYAASIFKVIRNPNLFMFNTMLRGYSNSDDSKQAFVIFNDLRNQDFLPDEFSFITILKACARELAINSGQGIHGIVHRSGHGLFSHLNNMLLHFYCACGQIGDARKLFDEIPQRNDLVSWNTLMGGYLHASQPTVVLDFFRQMCRRGLIAGAYTVLTVSSAVGDVGYSLDGRSLHGQCIKLGLCSDLNVVTCLINMYAKFKDLESGQLIFDEVAEKDVVLWNCLIDNYARNGMLEIAIDSLHLMKHEGKQPNSSTLAGLLSACSTFGAVGTGKYLGHYVEEEGLVLDTALGTALIDMYAKCGFLDKAIDIFDKIKDKDVKTWTAMITGYGAHGQTRKAIDTLFRMEEEGFRPNEITFLAVLNACSHGGIVIEGMRCFKRMVYEYRMTPKIEHYGCIIDLLGRAGLLEEAHKLIKSLPSEGDITGWRALLAACRVYGDVELGESAMRMLVDLNDEHPTDSMLLSSTYAVAGRLSDYTQYQQIEEENRMKEGIRSSQMQTEKARKEAGRSLVCSYLLQHFGLDIFDPDRCIWEAMASPFYIQYSQSDFASDWDSALSSRRRVHPIDAISSS 1066
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9148198 9160128 + CmaCh18G011270.1 Cma18g01127 314465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01127 1066 Gene3D Tetratricopeptide repeat domain 789 1022 IPR011990 GO:0005515
Cma18g01127 1066 Gene3D Tetratricopeptide repeat domain 666 787 IPR011990 GO:0005515
Cma18g01127 1066 ProSiteProfiles Ankyrin repeat region circular profile. 77 109 - -
Cma18g01127 1066 SMART ANK_2a 77 106 IPR002110 GO:0005515
Cma18g01127 1066 Pfam Ankyrin repeats (3 copies) 48 108 IPR002110 GO:0005515
Cma18g01127 1066 Gene3D Tetratricopeptide repeat domain 576 665 IPR011990 GO:0005515
Cma18g01127 1066 Gene3D Tetratricopeptide repeat domain 484 575 IPR011990 GO:0005515
Cma18g01127 1066 ProSiteProfiles Protein kinase domain profile. 169 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01127 1066 Pfam PPR repeat family 713 760 IPR002885 -
Cma18g01127 1066 Pfam PPR repeat family 814 862 IPR002885 -
Cma18g01127 1066 Pfam PPR repeat family 510 559 IPR002885 -
Cma18g01127 1066 PANTHER - 457 1007 - -
Cma18g01127 1066 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 815 849 IPR002885 -
Cma18g01127 1066 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Cma18g01127 1066 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Cma18g01127 1066 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 613 647 IPR002885 -
Cma18g01127 1066 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 457 1007 - -
Cma18g01127 1066 Gene3D Transferase(Phosphotransferase) domain 1 159 410 - -
Cma18g01127 1066 Gene3D - 19 142 IPR036770 -
Cma18g01127 1066 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 714 748 IPR002885 -
Cma18g01127 1066 Pfam Protein tyrosine and serine/threonine kinase 173 392 IPR001245 GO:0004672|GO:0006468
Cma18g01127 1066 TIGRFAM PPR: pentatricopeptide repeat domain 716 749 IPR002885 -
Cma18g01127 1066 TIGRFAM PPR: pentatricopeptide repeat domain 615 645 IPR002885 -
Cma18g01127 1066 TIGRFAM PPR: pentatricopeptide repeat domain 818 851 IPR002885 -
Cma18g01127 1066 TIGRFAM PPR: pentatricopeptide repeat domain 789 816 IPR002885 -
Cma18g01127 1066 TIGRFAM PPR: pentatricopeptide repeat domain 514 547 IPR002885 -
Cma18g01127 1066 MobiDBLite consensus disorder prediction 1 43 - -
Cma18g01127 1066 MobiDBLite consensus disorder prediction 1 31 - -
Cma18g01127 1066 SUPERFAMILY Protein kinase-like (PK-like) 167 395 IPR011009 -
Cma18g01127 1066 Pfam PPR repeat 586 611 IPR002885 -
Cma18g01127 1066 Pfam PPR repeat 615 645 IPR002885 -
Cma18g01127 1066 Pfam PPR repeat 889 917 IPR002885 -
Cma18g01127 1066 ProSiteProfiles Ankyrin repeat profile. 77 109 IPR002110 GO:0005515
Cma18g01127 1066 SUPERFAMILY Ankyrin repeat 48 135 IPR036770 -
Cma18g01127 1066 SMART serkin_6 169 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01127 1066 CDD STKc_MAP3K-like 175 391 - -
Cma18g01127 1066 ProSitePatterns Protein kinases ATP-binding region signature. 175 196 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01127 Cma-Chr18:9148198 Cma06g00207 Cma-Chr6:1060919 2.90E-111 dispersed
Cma20g00249 Cma-Chr20:1220467 Cma18g01127 Cma-Chr18:9148198 3.49E-77 dispersed
Cma18g01127 Cma-Chr18:9148198 Cma04g01677 Cma-Chr4:8434069 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69314 PF07714 PK_Tyr_Ser-Thr 2.20E-55 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01127 - - mcha:111019088 1004.59