Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01128 ATGAAATTCGGCAAACAATTTACCGCTCAAATGGTTCCCGAATGGCGCCAAGCTTACATGGATTACGATTTTCTCAAGTCCCTTTTGAAGCAAATCGATACCTTCAACAAAACCCACGCCAAAAATCACCCCCCGAGCCACACTGGCCAGCTCAAAAGGGCTCTGACACTCTACAGGGCGTTCAGTGGTCTGACACTTCGCCACAGCCACAGCCATGGGCTTGCCAGTCCTGGATCGCCGCCGGATGCGGAGGAGCAGACGATTCTGGTGAACTCGGTGAACAGAGATGGGACGAAGAAGTACCGGACGACGTTTTTGATGGCGGATGAGGAGGGTGGCGAGTATGAGCTAGTGTACTTCCGGTCGTTGGATAGGGAGTTTAATAAAGTGGATAAGTTTTACAGGTCGAAAGTGGAGGAAGTTATGAAGGAAGCGAGTGTTTTGAATAAGCAAATGGATGCTTTGATTGCTTTCAGAATTAAAGTGGAGAATCCTAAGGGTGTTTGGGATTTCTCTGATGACCGGTCGGAGGAGATTACAAGGCTCGCCACTGATATTGCGGTTGCCACGGCGGCCTTGTCTTCTTCAACTCCTTCCGGGGTCCGAGCTAGTAGACGAGTTCACATAACGATGGACGCTATTGAGGAAGGGGAAGGTGGGTCGAGCCATAACGATAATGTTAAACCGGAGAACAAATCGAAAGTCGAAAAGGGAGAGGAAAAATCCAATGGGGAAGAAGAGAAAGCAACAAAGATGAGAGCCAACAGGCCACCTCCATTGGAGCTGCTTGATCGTGTGAAATTGAACACGACAGTAGAGACTCCAAGATCAACAATTAAAGGGCTTTTGAACTTTCCCAAGAACTCTGAACTTCAATTTAACAAAGAAAATCTTAACAAAATTGAGAATCAACTCAGGAAGGCTTTTGTTGTGTTCTATCACAAGCTTAGACTGCTGAAGAGCTTCAGTTTCTTGAATACTTTGGCATTTTCGAAGATAATGAAGAAATATGATAAGATTACTTCAAGAGATGCTGGAAAGGCATACATGAAGATGGTGGACAGCTCTTACCTCGGGAGTTCTGATGAGGTTTCGAAGTTAATGGAGAGGGTGGAAGCAGCTTTTATCAAACACTTCTGCAATGCTAATCGAACCAAAGGAATGAATATCTTGAGACCCAAAGCAAAGAAAGAAAGGCATAGAACAACATTTTCAGTTGGTTTCTTTGCTGGCTGCACCATAGCTCTTATCGTCGCCCTCATTTTCATTACACGAGCACGGCATATAATCGACCGAGAAGGCCACTCCCAGTATATGGATACCATGTTTCCTCTTTACAGCTTGTTTGGATTCGTTGTCTTGCACCTGTTAATGTATGCAGCAAACGTATACTTTTGGAGGAGATACCAAGTGAATTATTCATTCATCTTTGGTTTCAAACAAGGCACTGAGTTGGCGTACCGTGACGTTTTGCTTCCCAGTTTTGCCGTGGCGACTCTTGCTTTAGCCTGTGTTCTTTCCAATCTTGACATGGAGATGGACCCTGAAACCAAGCCATATCAAGCAGTGACTGAACTTCTACCTTTAGTTTTGCTCCTTGCTGTGGTTGCAGTATTCTTGTGTCCATTCAACATCCTATATCGCTCGAGTCGCTTCTTCTGCTTAAAAACTCTGTACCGCTGCATATGTGCTCCCCTCTACATGGTCGTCTTCGCTGATTTTTTCTTGGCAGATCAGTTCACGAGCCAGGTGCAAGCACTTCGTAGCTTGGAATTCTACATTTGCCATTACGGTTGGGGAGATTACAAACACCGACAAAACACTTGTAGAGAGAATACTGTATTCAACACGTTCAGTTTCATCATTGCTGTTATTCCATATTGGTCACGTCTTCTTCAGTGTCTCAGGCGACTGTATGAGGAGAAAGATGTAATGCAGGGATACAATGGACTGAAGTACTTCTTGACCATTGTAGCTGTTTGCTTGAGGACAGCTTACAATCTGAACAAGGGAGTATTAACTTGGAAAGTTCTAGCCGCAGTTTTCTCGGCTGTGGCTGCCATTATATGCACGTATTGGGACATCGTAATGGACTGGGGCCTCCTGCAGCGGAATTCCAAGAACCGCTGGTTGCGAGACAAGCTACTTGTTGGTCACAACAGTGTGTACTTTGTGGCAATGGGCTTGAATGTTTTGCTGCGGTTTGCTTGGCTGCAAACCGTGTTGGATTTCCAGTTCTCCTTCCTGCACACACAAGGTTTGATTACAATAGTTGCCAGCCTCGAGATCATTCGCCGTGGCATATGGAATTTCTTCAGGCTGGAGAATGAGCATCTGAACAATGTTGGGAAGTACCGTGCATTTAAATCTGTACCGCTGCCTTTCAACTATGATGAAGATGATGACAAAGATGATTAA 2418 45.12 MKFGKQFTAQMVPEWRQAYMDYDFLKSLLKQIDTFNKTHAKNHPPSHTGQLKRALTLYRAFSGLTLRHSHSHGLASPGSPPDAEEQTILVNSVNRDGTKKYRTTFLMADEEGGEYELVYFRSLDREFNKVDKFYRSKVEEVMKEASVLNKQMDALIAFRIKVENPKGVWDFSDDRSEEITRLATDIAVATAALSSSTPSGVRASRRVHITMDAIEEGEGGSSHNDNVKPENKSKVEKGEEKSNGEEEKATKMRANRPPPLELLDRVKLNTTVETPRSTIKGLLNFPKNSELQFNKENLNKIENQLRKAFVVFYHKLRLLKSFSFLNTLAFSKIMKKYDKITSRDAGKAYMKMVDSSYLGSSDEVSKLMERVEAAFIKHFCNANRTKGMNILRPKAKKERHRTTFSVGFFAGCTIALIVALIFITRARHIIDREGHSQYMDTMFPLYSLFGFVVLHLLMYAANVYFWRRYQVNYSFIFGFKQGTELAYRDVLLPSFAVATLALACVLSNLDMEMDPETKPYQAVTELLPLVLLLAVVAVFLCPFNILYRSSRFFCLKTLYRCICAPLYMVVFADFFLADQFTSQVQALRSLEFYICHYGWGDYKHRQNTCRENTVFNTFSFIIAVIPYWSRLLQCLRRLYEEKDVMQGYNGLKYFLTIVAVCLRTAYNLNKGVLTWKVLAAVFSAVAAIICTYWDIVMDWGLLQRNSKNRWLRDKLLVGHNSVYFVAMGLNVLLRFAWLQTVLDFQFSFLHTQGLITIVASLEIIRRGIWNFFRLENEHLNNVGKYRAFKSVPLPFNYDEDDDKDD 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9171562 9175800 + CmaCh18G011280.1 Cma18g01128 314466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01128 805 Pfam EXS family 442 779 IPR004342 GO:0016021
Cma18g01128 805 ProSiteProfiles EXS domain profile. 610 805 IPR004342 GO:0016021
Cma18g01128 805 CDD SPX_PHO1_like 2 347 IPR034092 -
Cma18g01128 805 MobiDBLite consensus disorder prediction 214 256 - -
Cma18g01128 805 ProSiteProfiles SPX domain profile. 1 351 IPR004331 -
Cma18g01128 805 PANTHER PHOSPHATE TRANSPORTER PHO1 HOMOLOG 3 1 805 - -
Cma18g01128 805 Pfam SPX domain 1 353 IPR004331 -
Cma18g01128 805 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 1 805 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01128 - - - csv:101215812 1394.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00730 Cma-Chr12:4390097 Cma18g01128 Cma-Chr18:9171562 0 dispersed
Cma12g00731 Cma-Chr12:4408846 Cma18g01128 Cma-Chr18:9171562 0 dispersed
Cma15g00255 Cma-Chr15:1221954 Cma18g01128 Cma-Chr18:9171562 0 dispersed
Cma18g01128 Cma-Chr18:9171562 Cma18g01131 Cma-Chr18:9179371 5.39E-17 proximal
Cma05g00836 Cma-Chr5:5493036 Cma18g01128 Cma-Chr18:9171562 0 transposed
Cma05g00850 Cma-Chr5:5766888 Cma18g01128 Cma-Chr18:9171562 7.10E-47 transposed
Cma15g00253 Cma-Chr15:1217160 Cma18g01128 Cma-Chr18:9171562 0 wgd
Cma18g01128 Cma-Chr18:9171562 Cma04g01676 Cma-Chr4:8424631 0 wgd
Cma18g01128 Cma-Chr18:9171562 Cma04g02778 Cma-Chr4:18654690 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g964 . . . . . . . . . Cmo18g01150 . Cma18g01128 . Car18g01042 Sed06g1507 . . Bhi07g01530 Tan04g1051 Cmetu06g0752 Lac13g0343 Hepe10g1767 . . Cla05g02420 Cam05g2601 Cec05g2632 Cco05g2672 Clacu05g2602 Cmu05g2456 Cre05g2572 . . . . Lsi04g00392 . Chy10g01029 Cme10g00389 . . . . . . . . . . . . . . Car15g00256 Cpe13g00964 . . . . . . . . . . . . . . . . . Chy09g00228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000170 6 7 5 5 5 5 11 5 5 5 6 5 10 5 5 10 5 0 5 5 5 8 5 7 8 5 5 12 17 6 193
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01128 Cma_Chr18 FPKM 1.38694 1.59024 0.0 0.276923 0.449808 0.443568 0.373102 0.241729 0.0 0.0