Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01138 ATGGGTTCTGTTCTTTTGTTTTTGGCAGGCTTCTATGCCATAGTTTCATCTGTTGATGCCTATGCAGGTGGAGGGTGGAGGGGCGCTCAAGCTACCTTCTATGGTGGGAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGCAACTTGTACAGTCAAGGATATGGAACAAACACGGCTGCTTTGAGTACGGCTCTGTTCAACAATGGGTTGAGCTGTGGTTCTTGTTATGAGATTAGGTGCACCAGTGGCCGTAAATGGTGCCTACCAGGCTCCATTGTGGTCACAGCCACCAATTTCTGCCCTCCAAATAGTGCCCTACCCAACAACGCTGGAGGGTGGTGCAATCCTCCATTGCAGCACTTTGATCTCTCTCAGCCTGTCTACCAACACATTGCTCAGTACAAAGCAGGAATTGTGCAGTTTCCATCAAAGGTTCAAGAACCGGTTGGCAAGCAATGTCAAGGAATTGGGGACAGAACTGGCAGAGCAACAGCTTCCTCAATGGCCAAAGCCTGTCCTTCAAGGTCACCACCAGCGACGGCCGGACAGTCATTTCCAACAACGTTGTCCCAGCCCGCTGGTCCTTTGGACAGACTTACAGTGCTAACTGGAGAGCTGAAGAAGACATTTAACTATAACTTGTATGCTATGATGTTGCTATGTTTATTTACAGCTCCATGTCAGCGGGAGCAAATGAAAGACAGTACCTTAGCTGCCAAAAAGATAGACAAGGATAAAGCAAAAAACAACTCCTTGAAAGATCATTTCATGGAGAGAGTAAGCACCGAGCCTCCTCCTTCGCCCGCCTGGTGA 822 48.91 MGSVLLFLAGFYAIVSSVDAYAGGGWRGAQATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCTSGRKWCLPGSIVVTATNFCPPNSALPNNAGGWCNPPLQHFDLSQPVYQHIAQYKAGIVQFPSKVQEPVGKQCQGIGDRTGRATASSMAKACPSRSPPATAGQSFPTTLSQPAGPLDRLTVLTGELKKTFNYNLYAMMLLCLFTAPCQREQMKDSTLAAKKIDKDKAKNNSLKDHFMERVSTEPPPSPAW 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9207304 9210794 + CmaCh18G011380.1 Cma18g01138 314476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01138 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 142 IPR007112 -
Cma18g01138 273 PANTHER EXPANSIN 6 144 - -
Cma18g01138 273 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Cma18g01138 273 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Cma18g01138 273 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Cma18g01138 273 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Cma18g01138 273 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Cma18g01138 273 MobiDBLite consensus disorder prediction 167 193 - -
Cma18g01138 273 MobiDBLite consensus disorder prediction 170 193 - -
Cma18g01138 273 MobiDBLite consensus disorder prediction 244 273 - -
Cma18g01138 273 SMART dpbb_1 61 144 IPR007112 -
Cma18g01138 273 PANTHER EXPANSIN-A15 6 144 IPR002963 GO:0009664
Cma18g01138 273 Pfam Lytic transglycolase 61 143 IPR009009 -
Cma18g01138 273 MobiDBLite consensus disorder prediction 244 263 - -
Cma18g01138 273 SUPERFAMILY Barwin-like endoglucanases 25 143 IPR036908 -
Cma18g01138 273 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Cma18g01138 273 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Cma18g01138 273 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Cma18g01138 273 Gene3D - 13 145 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01138 Cma-Chr18:9207304 Cma11g00138 Cma-Chr11:744009 5.28E-70 dispersed
Cma01g00479 Cma-Chr1:2422883 Cma18g01138 Cma-Chr18:9207304 7.10E-71 wgd
Cma10g00197 Cma-Chr10:888640 Cma18g01138 Cma-Chr18:9207304 5.00E-67 wgd
Cma15g00264 Cma-Chr15:1261381 Cma18g01138 Cma-Chr18:9207304 1.60E-63 wgd
Cma18g01138 Cma-Chr18:9207304 Cma04g01668 Cma-Chr4:8389926 1.06E-92 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01138 - - cpep:111802732 306.219