Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01146 ATGGCTGAAGTCGAAGTCAGAGACCCAACAATCAAGCTATTTGGGAAGACGATTTCTTTGCCATTCAACCATGTCGATCATGATTCTGAATCCAAATTTGCTTCTTCAGAAGCTACTGTTCTTAAAGATTCCCAGAAGGAAACTTCATGTGAAGAACAGGGGAATGGCAGTGAAAAACAGAGCACAGAGCAAACGACATCGGTAATCAGTGAGAACCCATCAGTAGAAAGAGAAATTTCATCACCAAAAGCTGCAAAAAAGGAAGAAGAGAGCGATTCAAGCATGTCCCCTGACAATAAAACCTTAAAAAAACCAGACAAAATCCTTCCTTGTCCTCGATGTAACAGCACGGACACCAAATTCTGTTACTACAACAACTACAATGTCAACCAACCTCGTCATTTTTGCAAGAATTGCCAAAGATACTGGACGGCCGGTGGGACAATGAGAAACGTTCCCGTCGGCGCCGGCCGACGGAAGAACAAAACCTCATCTTCTTCACATTTCCATCAGTTAATAATTCCCGACGGCGGAAATGGAACCTTTCTCACTTTTGGCTCAGATTCTTCAAATGGGTTTCTCTTTGGTACAGAAAATGGAGATGACCAGTCAATTACAGCCTCCAATTCATCGGAGAAAGGAAGTAAAATCACTTCACAGCAATCAGTAGTGAAAAAGATTGTCCCGTTTCCATGGCCTTATTATTCAATGTCTCCGCCGCCATTCGCCCCGCCGGTGTATCCTGTGACGTATTACCCTGCGCCACCGTACTGGGAGTACACAGCGCCGCCTTCTTGGACGGTAGTTAATCCCAACAGTGAAAGTTCGTTAACAAATTCCTCTGTTTTGGGGAAACGGTTAAGAGATGAGAGAAGTGTGAAACAGAGCAATTATGAACAACCCTGTTTCTTGATTCCAAAGACATTGAAACTGGATGATCCAAACGAAAAAGCTGCAGCAAGCTCCATCAATGGCGGACTTTTCAGCTCTTTCCAACAAACTTCAAAGGGAAAAGTAGAACATCACAGTGAAAGTTACTCGCTTTTGCAGGCAAATCCAGCAGCTTTTTCTCGGGCTTTGAAATTCCGAGAGATTGCTTAG 1101 43.78 MAEVEVRDPTIKLFGKTISLPFNHVDHDSESKFASSEATVLKDSQKETSCEEQGNGSEKQSTEQTTSVISENPSVEREISSPKAAKKEEESDSSMSPDNKTLKKPDKILPCPRCNSTDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKTSSSSHFHQLIIPDGGNGTFLTFGSDSSNGFLFGTENGDDQSITASNSSEKGSKITSQQSVVKKIVPFPWPYYSMSPPPFAPPVYPVTYYPAPPYWEYTAPPSWTVVNPNSESSLTNSSVLGKRLRDERSVKQSNYEQPCFLIPKTLKLDDPNEKAAASSINGGLFSSFQQTSKGKVEHHSESYSLLQANPAAFSRALKFREIA 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9232241 9234040 - CmaCh18G011460.1 Cma18g01146 314484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01146 366 MobiDBLite consensus disorder prediction 24 109 - -
Cma18g01146 366 ProSiteProfiles Zinc finger Dof-type profile. 109 163 IPR003851 GO:0003677|GO:0006355
Cma18g01146 366 PANTHER CYCLIC DOF FACTOR 2 202 364 IPR045174 GO:0003700|GO:0006355
Cma18g01146 366 PANTHER CYCLIC DOF FACTOR 2 5 189 IPR045174 GO:0003700|GO:0006355
Cma18g01146 366 MobiDBLite consensus disorder prediction 80 107 - -
Cma18g01146 366 Pfam Dof domain, zinc finger 106 163 IPR003851 GO:0003677|GO:0006355
Cma18g01146 366 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 202 364 - -
Cma18g01146 366 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 5 189 - -
Cma18g01146 366 MobiDBLite consensus disorder prediction 54 77 - -
Cma18g01146 366 ProSitePatterns Zinc finger Dof-type signature. 111 147 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01146 - - - bhj:120080758 507.679
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01665 Cma18g01146 CCT
Cma04g01665 Cma18g01146 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00586 Cma-Chr14:2908640 Cma18g01146 Cma-Chr18:9232241 1.28E-57 dispersed
Cma18g00411 Cma-Chr18:2242124 Cma18g01146 Cma-Chr18:9232241 8.48E-36 dispersed
Cma01g00791 Cma-Chr1:4266501 Cma18g01146 Cma-Chr18:9232241 2.42E-61 wgd
Cma10g00196 Cma-Chr10:882611 Cma18g01146 Cma-Chr18:9232241 2.23E-70 wgd
Cma18g01146 Cma-Chr18:9232241 Cma04g01665 Cma-Chr4:8375928 3.54E-152 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g924 . . . . . Bpe10g00878 Bma14g01650 Bma15g00151 Cmo04g01744 Cmo18g01164 . Cma18g01146 . Car18g01055 Sed06g1520 Cpe09g00184 Cpe01g01472 Bhi07g01554 Tan04g1071 Cmetu10g1699 Lac13g0326 Hepe10g1750 . . Cla05g02435 Cam05g2620 Cec05g2653 Cco05g2691 Clacu05g2622 Cmu05g2476 Cre05g2589 . . . . Lsi04g00411 Csa05g02462 Chy10g01010 Cme10g00408 Blo06g00909 Blo11g00777 Bda07g01470 . . . . . . . . Cma04g01665 . Car04g01704 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007008 2 1 2 2 1 1 2 1 1 1 1 1 2 1 0 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36826 PF02701 zf-Dof 2.80E-32 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01146 Cma_Chr18 FPKM 0.893437 1.170148 0.835218 1.386837 3.525251 3.383874 3.789518 0.276237 0.235932 0.0