Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01149 ATGGCAATCTCGTGTATTCCAACATGCCAATTTGCTCTCACAAAACCCAAGAATGAGTTCATAAATCAACCCCATCCACTTTCTCTTTTCTCCAAATGTGCATCTCTGAGGGAGCTCAAGCAAATTCAAGCTTATACCATCAAAACAAATCTTCACAATGACATCTCTGTTCTCACAAAGCTCATTAATTTCTGCACGCGTTACCCCACCACTTCGTCCATGGACCATGCCCACCACCTGTTCGATAAAATGCTTGACAAGGATATTGTACTGTTTAACATAATGGCTCGTGGTTATGCTCGCTCTAATTCTCCATATCTCGTATTCTCTCTGTTTGCTCAAGTCCTGTGCTCTGGATTGCTTCCTGATGACTACACATTCTCGTCCCTTCTCAAGGCGTGTGCTGGTTCCAAGGCCTTGGAAGAAGGCAGGCAGTTGCATTGCTTTGCTATTAAACTGGGATTTGGTCACAATATTTACATATGCCCAACCCTTATAAATATGTATGCGGCGTGCAATGACATGAATGCAGCACGGGGAGTTTTTGATGGAATGGAGGAGCCATGTATTGTTAGCTATAATGCCATTATTACAGGCTATGCTCGAAGTAGTCAACCCAATGAGGCCTTGTCATTGTTTAGAGAATTGCAAGCTAGCAATCTCGAGCCTACTGATGTTACAATGCTTAGTATAATTATGTCATGTGCTCTGTTGGGAGCACTAGATCTTGGAAGGTGGATTCATGAATATGTTAAGAAGAAAGGATTTGATAAATTTGTGAAGGTGAACACTGCACTTATAGATATGTATGCGAAATGCGGTAGTATAGTTGATGCCATTTCGATCTTCGAGGGAATGCGTGTGAGAGACACACAAGCTTGGTCTGCAATGATAGTTGCATATGCAACTCATGGGGATGGCTTGAAAGCCATCTCGATGTTTGAAGAGATGAAGAAAGCAGGAGTTCGACCCGATGAGATTACGTTTTTGGGACTTTTGTATGCTTGCAGTCATGCTGGACTAGTAGAGGAAGGTAGAGGGTATTTCTATAGCATGTATAAAAACCATGGAATGACTCCAGGGATCAAGCATTATGGATGTATGGTGGATTTGCTTGGTCGAACAGGTCGATTAGACGAGGCTTATAAGTTCATAGATGAATTGGCAATTAAGCCGACACCTATTCTCTGGCGCACCCTGTTATCTGCTTGCAGCAACCACGGTAATGTCGACTTGGCAAAGCGAGTCATTGAACGGATTTTTGAATTAGATGATTCCCATGGAGGCGACTATGTCATATTATCGAACTTGTGTGCTCGATTAGGAAGATGGGAAGACGTGAACCGTCTGAGGAAATTGATGAAAGATAGAGGGGTGGTGAAGGTTCCTGGGTGTAGTTCTGTGGAGGTAAACAATGTAGTACATGAGTTCTTCTCTGGAGATGGAGTTCACTCCATTTCAGTTGAGCTGCGACGAGCGCTCGACGAGTTAATCCAGGAAATAAAGTTAGCGGGATATGTACCGGATACTTCTTTAGTATATCATGCTGATATGGAAGAGGAAGCGAAAGAGCTCGTCCTGAGATATCACAGTGAAAAGCTAGCCATGGCTTTTGGGCTCCTAAATACACCTCCCGGTACAACTATAAGGGTAGTCAAGAACCTCCGTATTTGTGGAGATTGTCACAATGCTGCAAAGCTTATATCTCTGATTTTCGGGAGGCAGATCGTCATTAGGGACGTTCAACGATTCCATCGCTTTGAAGACGGGCAATGCTCCTGTTGTGATTTCTGA 1794 43.42 MAISCIPTCQFALTKPKNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDISVLTKLINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVAYATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKNHGMTPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9245799 9247683 - CmaCh18G011490.1 Cma18g01149 314487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01149 597 Gene3D Tetratricopeptide repeat domain 25 141 IPR011990 GO:0005515
Cma18g01149 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 122 IPR002885 -
Cma18g01149 597 Pfam PPR repeat family 290 336 IPR002885 -
Cma18g01149 597 Pfam PPR repeat family 188 235 IPR002885 -
Cma18g01149 597 Pfam PPR repeat family 87 135 IPR002885 -
Cma18g01149 597 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 17 584 - -
Cma18g01149 597 Pfam DYW family of nucleic acid deaminases 505 597 IPR032867 GO:0008270
Cma18g01149 597 Pfam E motif 407 469 IPR046848 -
Cma18g01149 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Cma18g01149 597 PANTHER BNAA02G26650D PROTEIN 17 584 - -
Cma18g01149 597 Gene3D Tetratricopeptide repeat domain 241 352 IPR011990 GO:0005515
Cma18g01149 597 Gene3D Tetratricopeptide repeat domain 353 494 IPR011990 GO:0005515
Cma18g01149 597 Gene3D Tetratricopeptide repeat domain 142 240 IPR011990 GO:0005515
Cma18g01149 597 Pfam PPR repeat 164 187 IPR002885 -
Cma18g01149 597 Pfam PPR repeat 365 388 IPR002885 -
Cma18g01149 597 Pfam PPR repeat 264 289 IPR002885 -
Cma18g01149 597 TIGRFAM PPR: pentatricopeptide repeat domain 264 290 IPR002885 -
Cma18g01149 597 TIGRFAM PPR: pentatricopeptide repeat domain 293 326 IPR002885 -
Cma18g01149 597 TIGRFAM PPR: pentatricopeptide repeat domain 191 224 IPR002885 -
Cma18g01149 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01149 - - - csv:116404120 1073.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00589 Cma-Chr14:2921332 Cma18g01149 Cma-Chr18:9245799 1.40E-117 dispersed
Cma18g01149 Cma-Chr18:9245799 Cma01g01066 Cma-Chr1:7887582 4.09E-167 dispersed
Cma18g01149 Cma-Chr18:9245799 Cma10g00565 Cma-Chr10:2591943 2.89E-176 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g81 . . . . . . . . . . . Cma18g01149 . . . . . . . . . . . . . . . . . . . . . . . . . . Cme10g00412 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g919 . . . . . . . . . Cmo18g01170 . Cma18g01149 . Car18g01058 . Cpe09g00181 . . . . . . . . Cla05g02440 . . . . . . . . . . . . Chy10g01005 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01149 Cma_Chr18 FPKM 2.637124 2.504694 7.631114 8.315541 15.965409 16.527912 16.914951 4.625122 4.733954 3.896188