Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01149 ATGGCAATCTCGTGTATTCCAACATGCCAATTTGCTCTCACAAAACCCAAGAATGAGTTCATAAATCAACCCCATCCACTTTCTCTTTTCTCCAAATGTGCATCTCTGAGGGAGCTCAAGCAAATTCAAGCTTATACCATCAAAACAAATCTTCACAATGACATCTCTGTTCTCACAAAGCTCATTAATTTCTGCACGCGTTACCCCACCACTTCGTCCATGGACCATGCCCACCACCTGTTCGATAAAATGCTTGACAAGGATATTGTACTGTTTAACATAATGGCTCGTGGTTATGCTCGCTCTAATTCTCCATATCTCGTATTCTCTCTGTTTGCTCAAGTCCTGTGCTCTGGATTGCTTCCTGATGACTACACATTCTCGTCCCTTCTCAAGGCGTGTGCTGGTTCCAAGGCCTTGGAAGAAGGCAGGCAGTTGCATTGCTTTGCTATTAAACTGGGATTTGGTCACAATATTTACATATGCCCAACCCTTATAAATATGTATGCGGCGTGCAATGACATGAATGCAGCACGGGGAGTTTTTGATGGAATGGAGGAGCCATGTATTGTTAGCTATAATGCCATTATTACAGGCTATGCTCGAAGTAGTCAACCCAATGAGGCCTTGTCATTGTTTAGAGAATTGCAAGCTAGCAATCTCGAGCCTACTGATGTTACAATGCTTAGTATAATTATGTCATGTGCTCTGTTGGGAGCACTAGATCTTGGAAGGTGGATTCATGAATATGTTAAGAAGAAAGGATTTGATAAATTTGTGAAGGTGAACACTGCACTTATAGATATGTATGCGAAATGCGGTAGTATAGTTGATGCCATTTCGATCTTCGAGGGAATGCGTGTGAGAGACACACAAGCTTGGTCTGCAATGATAGTTGCATATGCAACTCATGGGGATGGCTTGAAAGCCATCTCGATGTTTGAAGAGATGAAGAAAGCAGGAGTTCGACCCGATGAGATTACGTTTTTGGGACTTTTGTATGCTTGCAGTCATGCTGGACTAGTAGAGGAAGGTAGAGGGTATTTCTATAGCATGTATAAAAACCATGGAATGACTCCAGGGATCAAGCATTATGGATGTATGGTGGATTTGCTTGGTCGAACAGGTCGATTAGACGAGGCTTATAAGTTCATAGATGAATTGGCAATTAAGCCGACACCTATTCTCTGGCGCACCCTGTTATCTGCTTGCAGCAACCACGGTAATGTCGACTTGGCAAAGCGAGTCATTGAACGGATTTTTGAATTAGATGATTCCCATGGAGGCGACTATGTCATATTATCGAACTTGTGTGCTCGATTAGGAAGATGGGAAGACGTGAACCGTCTGAGGAAATTGATGAAAGATAGAGGGGTGGTGAAGGTTCCTGGGTGTAGTTCTGTGGAGGTAAACAATGTAGTACATGAGTTCTTCTCTGGAGATGGAGTTCACTCCATTTCAGTTGAGCTGCGACGAGCGCTCGACGAGTTAATCCAGGAAATAAAGTTAGCGGGATATGTACCGGATACTTCTTTAGTATATCATGCTGATATGGAAGAGGAAGCGAAAGAGCTCGTCCTGAGATATCACAGTGAAAAGCTAGCCATGGCTTTTGGGCTCCTAAATACACCTCCCGGTACAACTATAAGGGTAGTCAAGAACCTCCGTATTTGTGGAGATTGTCACAATGCTGCAAAGCTTATATCTCTGATTTTCGGGAGGCAGATCGTCATTAGGGACGTTCAACGATTCCATCGCTTTGAAGACGGGCAATGCTCCTGTTGTGATTTCTGA 1794 43.42 MAISCIPTCQFALTKPKNEFINQPHPLSLFSKCASLRELKQIQAYTIKTNLHNDISVLTKLINFCTRYPTTSSMDHAHHLFDKMLDKDIVLFNIMARGYARSNSPYLVFSLFAQVLCSGLLPDDYTFSSLLKACAGSKALEEGRQLHCFAIKLGFGHNIYICPTLINMYAACNDMNAARGVFDGMEEPCIVSYNAIITGYARSSQPNEALSLFRELQASNLEPTDVTMLSIIMSCALLGALDLGRWIHEYVKKKGFDKFVKVNTALIDMYAKCGSIVDAISIFEGMRVRDTQAWSAMIVAYATHGDGLKAISMFEEMKKAGVRPDEITFLGLLYACSHAGLVEEGRGYFYSMYKNHGMTPGIKHYGCMVDLLGRTGRLDEAYKFIDELAIKPTPILWRTLLSACSNHGNVDLAKRVIERIFELDDSHGGDYVILSNLCARLGRWEDVNRLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHSISVELRRALDELIQEIKLAGYVPDTSLVYHADMEEEAKELVLRYHSEKLAMAFGLLNTPPGTTIRVVKNLRICGDCHNAAKLISLIFGRQIVIRDVQRFHRFEDGQCSCCDF 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9245799 9247683 - CmaCh18G011490.1 Cma18g01149 314487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01149 597 Gene3D Tetratricopeptide repeat domain 25 141 IPR011990 GO:0005515
Cma18g01149 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 122 IPR002885 -
Cma18g01149 597 Pfam PPR repeat family 290 336 IPR002885 -
Cma18g01149 597 Pfam PPR repeat family 188 235 IPR002885 -
Cma18g01149 597 Pfam PPR repeat family 87 135 IPR002885 -
Cma18g01149 597 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 17 584 - -
Cma18g01149 597 Pfam DYW family of nucleic acid deaminases 505 597 IPR032867 GO:0008270
Cma18g01149 597 Pfam E motif 407 469 IPR046848 -
Cma18g01149 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Cma18g01149 597 PANTHER BNAA02G26650D PROTEIN 17 584 - -
Cma18g01149 597 Gene3D Tetratricopeptide repeat domain 241 352 IPR011990 GO:0005515
Cma18g01149 597 Gene3D Tetratricopeptide repeat domain 353 494 IPR011990 GO:0005515
Cma18g01149 597 Gene3D Tetratricopeptide repeat domain 142 240 IPR011990 GO:0005515
Cma18g01149 597 Pfam PPR repeat 164 187 IPR002885 -
Cma18g01149 597 Pfam PPR repeat 365 388 IPR002885 -
Cma18g01149 597 Pfam PPR repeat 264 289 IPR002885 -
Cma18g01149 597 TIGRFAM PPR: pentatricopeptide repeat domain 264 290 IPR002885 -
Cma18g01149 597 TIGRFAM PPR: pentatricopeptide repeat domain 293 326 IPR002885 -
Cma18g01149 597 TIGRFAM PPR: pentatricopeptide repeat domain 191 224 IPR002885 -
Cma18g01149 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00589 Cma-Chr14:2921332 Cma18g01149 Cma-Chr18:9245799 1.40E-117 dispersed
Cma18g01149 Cma-Chr18:9245799 Cma01g01066 Cma-Chr1:7887582 4.09E-167 dispersed
Cma18g01149 Cma-Chr18:9245799 Cma10g00565 Cma-Chr10:2591943 2.89E-176 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01149 - - csv:116404120 1073.92