Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01152 ATGTTCATCTACTACAGAGAATGTCTCAAGAATCACGCCGCCACCGTCGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTTATGCCTTTACTTACCGCCACACCCTCCGATCCCACTTCTCTAAATTGTGCAGCCTGTGGCTGCCACCGCAACTTCCACCGCCGTGAACCGGACGATTCCTGGCAGAATCTCCCCACACACCGACGTTTCCAATCATATCGCCTCTGCACACCGCCGTCGCCGAAGCCTCAAAGCCCATCCTCGCCGATCCCTTTACAAATTTCGCACATCCCACCGCCAGTTCACTTGTCCTCCCCTCATATGTTGCTAGCATTGAGCACCGGCGCTGCGGCGCAAGTGCAGCGTGGCGGTCGATTCAACCCAAAACAGAGGAAGAGAAACAGGACCAAATTCAGCAGGGATCAAAAGCAAAAGATGCGATCTTTCTCCGAGAAAATGGGATGGAAAATTGGGAAATGTGATGAAAGGTTAGTGGAGGAATTCTGTAATGAAATTGGGATCGGAAAACGGGTGCTCAGAGTTTGGATGCATAATAACAAATACATGGGAGGAAGAACAGAGAAAAACAGAGATTCTCAGAGTAGCGAAAATGGAAGGGATGACTCAAAACAGAGCTCATAA 642 51.09 MFIYYRECLKNHAATVGGHALDGCGEFMPLLTATPSDPTSLNCAACGCHRNFHRREPDDSWQNLPTHRRFQSYRLCTPPSPKPQSPSSPIPLQISHIPPPVHLSSPHMLLALSTGAAAQVQRGGRFNPKQRKRNRTKFSRDQKQKMRSFSEKMGWKIGKCDERLVEEFCNEIGIGKRVLRVWMHNNKYMGGRTEKNRDSQSSENGRDDSKQSS 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9258379 9259020 + CmaCh18G011520.1 Cma18g01152 314490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01152 213 MobiDBLite consensus disorder prediction 190 213 - -
Cma18g01152 213 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9-LIKE 3 196 - -
Cma18g01152 213 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 5 56 IPR006456 -
Cma18g01152 213 MobiDBLite consensus disorder prediction 126 140 - -
Cma18g01152 213 MobiDBLite consensus disorder prediction 189 213 - -
Cma18g01152 213 Gene3D - 116 191 - -
Cma18g01152 213 Pfam ZF-HD protein dimerisation region 4 57 IPR006456 -
Cma18g01152 213 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 3 196 - -
Cma18g01152 213 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 5 56 IPR006456 -
Cma18g01152 213 SUPERFAMILY Homeodomain-like 122 189 IPR009057 -
Cma18g01152 213 MobiDBLite consensus disorder prediction 120 149 - -
Cma18g01152 213 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 131 188 IPR006455 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01027 Cma-Chr11:5597756 Cma18g01152 Cma-Chr18:9258379 1.74E-60 dispersed
Cma14g00594 Cma-Chr14:2947003 Cma18g01152 Cma-Chr18:9258379 8.68E-63 dispersed
Cma18g01152 Cma-Chr18:9258379 Cma07g00485 Cma-Chr7:2110438 2.02E-44 dispersed
Cma15g00271 Cma-Chr15:1286159 Cma18g01152 Cma-Chr18:9258379 1.31E-55 wgd
Cma18g01152 Cma-Chr18:9258379 Cma04g02764 Cma-Chr4:18595504 3.10E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36827 PF04770 ZF-HD_dimer 4.80E-28 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01152 - - cmo:103489117 302.367