Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01154 ATGGAAGCTGGGAAGCAAAGTGATGTGGTGTTGTTTGGAACGTGGTATAGCTCATACTGCACCAGGATTATTCTAGCACTCAAAATGAAAGGCATAAACTTTGAGTATGTAGAAGAAGATTTAGCAAACAAGAGTGAATTGCTTATCAACTTCAATCCAGTTCATCAGAAAGTCCCTGTACTCGTCCATAAAGGAAACCCAATTGCAGAGTCCTTTGTCATTCTTGAATACATAGAAGATCACTGGAACCACCGTCCCAAAATTCTTCCTGAAGACCCTTATGAAAGATCCAAAGTTCGTTTCTGGGCTCAATTCTATGACCAAAAGATCATTTTAGGCACCTTGCCAATCTTCAAGTCCGAAAGAGAAGAAAGAGAGGGAGCTTGTAAGGAGCTATCAAAACTGATAAGGGTATTCGAAGAAGGAATGAAGAAAGATTTTCCAGGAAAATTTCCCTTTTATGACGGAAAAAACTTGGGACTTCTTGATATAGTTGTGGGGCCTAATGCCTGCAACTATTTGGCACTGCGTGAGGTTCTTGGAGATGTAATTGGCTCAAAAAGAAACCCTGATTTTTTCTCATGGGTGGATGCTTTGAAGGATCATCCTCTGATAAAGGAAACTCTTCCTCCTCACCATAAAATGGTTCAGAAGCTGAAAGAGAAGATGCCTCAAAAGCCTAAAGATCACTGA 693 40.4 MEAGKQSDVVLFGTWYSSYCTRIILALKMKGINFEYVEEDLANKSELLINFNPVHQKVPVLVHKGNPIAESFVILEYIEDHWNHRPKILPEDPYERSKVRFWAQFYDQKIILGTLPIFKSEREEREGACKELSKLIRVFEEGMKKDFPGKFPFYDGKNLGLLDIVVGPNACNYLALREVLGDVIGSKRNPDFFSWVDALKDHPLIKETLPPHHKMVQKLKEKMPQKPKDH 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9264619 9265672 - CmaCh18G011540.1 Cma18g01154 314492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01154 230 Pfam Glutathione S-transferase, N-terminal domain 9 79 IPR004045 -
Cma18g01154 230 SFLD Main.3: Omega- and Tau-like 6 224 IPR045073 -
Cma18g01154 230 SUPERFAMILY Thioredoxin-like 8 110 IPR036249 -
Cma18g01154 230 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 223 IPR045073 -
Cma18g01154 230 CDD GST_N_Tau 9 82 - -
Cma18g01154 230 SUPERFAMILY GST C-terminal domain-like 80 221 IPR036282 -
Cma18g01154 230 Gene3D - 89 228 - -
Cma18g01154 230 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 7 86 IPR004045 -
Cma18g01154 230 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 92 225 IPR010987 -
Cma18g01154 230 CDD GST_C_Tau 93 221 IPR045074 GO:0004364|GO:0006749
Cma18g01154 230 Gene3D Glutaredoxin 5 88 - -
Cma18g01154 230 SFLD Main (cytGST) 6 224 - -
Cma18g01154 230 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 6 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01154 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csin:114288181 291.197
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01129 Cma-Chr13:8380382 Cma18g01154 Cma-Chr18:9264619 2.85E-58 dispersed
Cma18g01154 Cma-Chr18:9264619 Cma14g01961 Cma-Chr14:13801828 1.87E-22 dispersed
Cma18g01154 Cma-Chr18:9264619 Cma06g01155 Cma-Chr6:7777316 3.20E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g909 . . . . . . Bma14g01643 . . Cmo18g01176 . Cma18g01154 . Car18g01063 . . . . . . . . . . Cla05g02445 Cam05g2631 Cec05g2664 Cco05g2702 Clacu05g2634 Cmu05g2488 Cre05g2601 . . . . Lsi04g00429 . . Cme10g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012942 0 1 0 2 0 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 2 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01154 Cma_Chr18 FPKM 3.096459 3.835204 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.155699