Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01160 ATGGATGCTGAAAATGGGATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAAAAAGAAGAACACCACCCTTGTTCCACCTCCGCCAACAACGGAACATCAACCACTACTCCAAATCTTCAATCCTCTTCTTCTTCTTCACCCAACAAGCCCCCGCCCAAAAGGACCACCACCAAAGACCGCCACACCAAAGTTGACGGCCGCGGTCGCCGTATTCGTATGCCGGCTCTTTGCGCTGCTAGGGTTTTTCAGCTCACTAGAGAACTCGGCCATAAGTCCGACGGGGAAACAATTGAGTGGCTTCTACAGCAAGCCGAGCCCGCCGTAATTGCAGCTACTGGAACCGGTACAATTCCGGCGAATTTCACTTCACTTAATATTTCCCTTCGTAGCTCCGGCTCCACCATCTCCGCTCCTTCCCACTTCCGGACGAGCTATTTCAACCCGACCCAATTCGCTGTTAGGACAAGATCCGATCTTTGGGATCGGAGTAATTCTCTCGTGGATGATTCTTCTACATTCTTGAATTTCAACTCTCCCAATTATGTCAAGCACGATCAGGGTGGAATTGATTTGACTGAGGCGGGAAAAAAACGGCGGCCGGAGCAGTCGGAATCTTCATCGGAAAATCCAATCGGGAATTATTTGGTTCAATCGAATTCCGGGTCGATTCCAGCTAGTCACGGCACGGCTGTGCCGACAACATTTTGGATGATGACGAATCCGAGTAATCCAGCGAGTGATCCGATGTGGACATTCCCGTCGATGAGTAGCAGCAGTATGTTCAGAGGAGCAGCTGCAGCTGGTGGCAGTGGCGGGTTTCATTTCATGAATCTTCCACCGCCAATGGCTCTTTTGCCAACTGCCCAACCGTTGGGTTCCGGGATCGGTGGCAGTGGCGGCGGTCCAGCCACCGACACCCACTTGGGGATGTTAGCAGCGCTGAGTGCTTATAGAACGATGCCGGGATTGTCAGTGTCAGAGTCTCCGACAAGAGGAGTGGCGGCTGTTCATCAAAGTGGGAATGAAGCTCATGATTCCACTTCAAATCTAGCTGCGATGGATTTGGTCATGGGTTCGGGGAACTTTCTTCAAGTCGTGGCCAACAACTTCGATGCCAGTGGTTTGTCTTGTGTATCCACTTTACGCTTCGATCAAGGCTATCGAGACGAAGTCAATTGTGGACGACCAGCAATGGCTCACTTACTGGCACACGTTTACAAGAACTTCATTAGGCCATACTATATGAACCCACAAACTTCGACGCTATGGTATATCCCTCAAAAGACCAAAGAAATTTTCAGTGCCCCAGATGATGTTTTAACTGCTGCTGAGAAGTACATGGAACAACATGGAACTGAAGCTTTTGAAAGGCTTATGCACAAGCAGGCTGAAAGAGATAGGCCGAGGAGGAACAACAATTACATGATATTCGATGATGATTACGTATATTGA 1458 49.11 MDAENGIRRPNFPLQLLEKKEEHHPCSTSANNGTSTTTPNLQSSSSSSPNKPPPKRTTTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHFRTSYFNPTQFAVRTRSDLWDRSNSLVDDSSTFLNFNSPNYVKHDQGGIDLTEAGKKRRPEQSESSSENPIGNYLVQSNSGSIPASHGTAVPTTFWMMTNPSNPASDPMWTFPSMSSSSMFRGAAAAGGSGGFHFMNLPPPMALLPTAQPLGSGIGGSGGGPATDTHLGMLAALSAYRTMPGLSVSESPTRGVAAVHQSGNEAHDSTSNLAAMDLVMGSGNFLQVVANNFDASGLSCVSTLRFDQGYRDEVNCGRPAMAHLLAHVYKNFIRPYYMNPQTSTLWYIPQKTKEIFSAPDDVLTAAEKYMEQHGTEAFERLMHKQAERDRPRRNNNYMIFDDDYVY 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9296551 9300881 + CmaCh18G011600.1 Cma18g01160 314498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01160 485 ProSiteProfiles TCP domain profile. 59 113 IPR017887 -
Cma18g01160 485 MobiDBLite consensus disorder prediction 196 215 - -
Cma18g01160 485 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 335 IPR005333 GO:0003700
Cma18g01160 485 MobiDBLite consensus disorder prediction 55 71 - -
Cma18g01160 485 PANTHER TRANSCRIPTION FACTOR TCP23 9 335 - -
Cma18g01160 485 MobiDBLite consensus disorder prediction 1 71 - -
Cma18g01160 485 MobiDBLite consensus disorder prediction 27 54 - -
Cma18g01160 485 Pfam TCP family transcription factor 57 170 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01160 - - - cmax:111485089 558.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00186 Cma-Chr10:850757 Cma18g01160 Cma-Chr18:9296551 2.11E-93 dispersed
Cma11g00151 Cma-Chr11:794669 Cma18g01160 Cma-Chr18:9296551 2.44E-19 dispersed
Cma13g01122 Cma-Chr13:8356359 Cma18g01160 Cma-Chr18:9296551 1.47E-53 dispersed
Cma18g00810 Cma-Chr18:7082679 Cma18g01160 Cma-Chr18:9296551 1.10E-39 dispersed
Cma18g01160 Cma-Chr18:9296551 Cma08g00938 Cma-Chr8:5846689 6.47E-37 dispersed
Cma04g01856 Cma-Chr4:9424413 Cma18g01160 Cma-Chr18:9296551 1.45E-46 transposed
Cma10g00184 Cma-Chr10:842053 Cma18g01160 Cma-Chr18:9296551 3.87E-17 wgd
Cma18g01160 Cma-Chr18:9296551 Cma04g01649 Cma-Chr4:8317424 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g894 . Blo16g01121 . Bda11g01222 Bpe13g01416 . . Bma15g00272 Cmo04g01729 Cmo18g01183 . Cma18g01160 . Car18g01068 Sed06g1538 . Cpe01g01458 Bhi07g01576 Tan04g1091 Cmetu10g1669 Lac13g0309 Hepe10g1732 . . Cla05g02451 Cam05g2637 Cec05g2670 Cco05g2708 Clacu05g2640 Cmu05g2494 Cre05g2607 . Cone19ag0952 . . Lsi04g00434 Csa05g02440 Chy10g00992 Cme10g00425 . . . Bda11g01222 . . . Bma06g00680 . . . . . Car04g01690 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36829 PF03634 TCP 1.50E-37 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01160 Cma_Chr18 FPKM 9.79833 11.084283 18.818562 20.834404 10.896677 10.688174 9.750051 0.666609 0.621878 0.95137