Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01161 ATGGTGCACGTCTCTTTCTACAGGAACTATGGAAAGACGTTCAAGAAACCTCGACGTCCTTATGAGAAGGAGCGTCTGGATGCAGAACTTAAACTAGTAGGTGAATATGGGCTTCGTTGTAAAAGGGAGCTATGGAGGGTTCAATATGCATTGAGCCGAATCCGTAACAACGCAAGAATGCTTTTAACTCTGGATGAAAAGAATCCGCGTAGGATTTTTGAGGGTGAGGCTCTGCTTAGGAGGATGAACAGGTATGGACTTTTGGATGAGAGTCAAAACAAGCTTGATTATGTTTTGGCACTTACAGTGGAGAATTTCCTTGAGCGTCGTCTTCAAACCCTCGTATTCAAGTCTGGAATGGCGAAGTCTATTCATCATGCTAGAGTGCTCATCAGGCAAAAGCATATAAGGGTTGGGAGGCAGGTGGTTAACATCCCTTCTTTCATGGTGAGAGTTGATTCTCAAAAGCACATAGACTTCTCTCTCACTAGTCCATTTGGAGGTGGTCGCCCCGGAAGAGTGAAGAGAAGGAACCAGAAGGCAGCTGCCAAGAAGGCTGCTGGTGGAGATGGAGATGAAGAAGACGAGGATTGA 594 45.79 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKAAGGDGDEEDED 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9301742 9303639 + CmaCh18G011610.1 Cma18g01161 314499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01161 197 SUPERFAMILY Alpha-L RNA-binding motif 12 159 - -
Cma18g01161 197 SMART s4_6 109 180 IPR002942 GO:0003723
Cma18g01161 197 ProSiteProfiles S4 RNA-binding domain profile. 109 180 - -
Cma18g01161 197 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
Cma18g01161 197 CDD S4 109 153 - -
Cma18g01161 197 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Cma18g01161 197 ProSitePatterns Ribosomal protein S4 signature. 107 131 IPR018079 GO:0019843
Cma18g01161 197 PANTHER 40S RIBOSOMAL PROTEIN S9-2-LIKE 5 197 - -
Cma18g01161 197 MobiDBLite consensus disorder prediction 163 197 - -
Cma18g01161 197 Gene3D - 108 165 IPR036986 GO:0003723
Cma18g01161 197 PANTHER 30S 40S RIBOSOMAL PROTEIN 5 197 IPR022801 -
Cma18g01161 197 TIGRFAM uS4_arch: ribosomal protein uS4 11 166 IPR005710 GO:0003735|GO:0006412|GO:0015935
Cma18g01161 197 Pfam S4 domain 109 152 IPR002942 GO:0003723
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01649 Cma18g01161 CCT
Cma04g01649 Cma18g01161 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01310 Cma-Chr9:9147764 Cma18g01161 Cma-Chr18:9301742 2.34E-137 dispersed
Cma14g01145 Cma-Chr14:8963763 Cma18g01161 Cma-Chr18:9301742 2.48E-10 dispersed
Cma18g01161 Cma-Chr18:9301742 Cma01g00854 Cma-Chr1:4808268 2.88E-146 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01161 K02997 - jre:108995453 359.762