Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01163 ATGGTGCGCAGTGTATCAAACCTCCTTCAACCCAAATTTACTGTGGGTGTGAGATCCGTTAAATTTGACTTTGTGGAGGAAAGTTTTTTTAAATTTTACTTTAACTCTATCCACCGCCGCCTCGACGGTGGCAGAGTACCGGAGAATTCTCTCTTCTTTATCTTCTCTGCGTACATTCTGGACCGGACTGTACACAGTCGCCGGCACCCGCCGCCGTTGGAGGGAATACCAGCCGACTTCTGGAAAGGAGAAAGAAGAAAGAAAGTCGACGGGGAAAAAGTGGGACCCATTTCCGCCTTTTCTCGTGTTTTTATTTTTCGTGGAGAGAATCCAGAGGACGAAGAACGCCAAAATCAGAGAGACCAGTTCCTTAGGCTTTTTTTTTTTTCATTTTTTATAGTTTTCCCTTTGGAAAGAGAAGGCAACATCGGATCGGATTGGAATTCTGAAATTTCTCCGTTTTTATTGGTTGCATCTGAGAGAGATATGTTGGAGGATCGCTCCTTCCTGGCGTCGAGGGTGTTCTCAAGCTCTTGCCAGCACGAAACTCAGTGGCCTTGCTTTAACTTAACTTATCGCCTCGAGGCCGGAATGGGAAACGGTAAGCGCCCATCAGATCATGATGCTGATGAACTTCATAGAAACGTGAGGCCTCGATCTTCATGGGATTCTGGCGACAGTTCTGATTCGGGCTCTCTAATCTCTTCCATTGGCAGAGACAACTCTATTAACTGCTTAATTCGCTGCTCCAGGTCGGATTATGGTTCTCTAGCATCGTTGAATCGAAGTTTTCGCTCGTTAATTCGTTCCGGGGAGCTTTACAAACTGAGGCGTTTGAATGATGTGATTGAACATTGGGTTTATTTCTCTTGTCATCTTCTTGAATGGGAAGCTTTCGATCCAAATCAGCGCAGATGGATGCATCTGCCCAGAATGGATTCTAATGAATGCTTCATGTGTTCTGATAAGGAATCCTTAGGAGTGGGGACTGACCTTCTTGTTTTTGGTAAGGATTTGAATTCCCATGTCACGTATAGATACAGTATATTGACAAATTCCTGGTGTCCTGGGGTTAGTATGAATGATCCCAGATGCTTGTTTGGGTCTGCTAGTAGAGGAGAGATAGCAATTCTAGCAGGTGGGTGTGATTCAAATGGCAACATACTCAGCTCAGCTGAGCTCTACAACTCCGAGACTAAAACATGGGTGACCCTTCCAAATATGGCCAAACCCAGAAAGCTTTGTTCTGGGGTTTTCATGGACAAGAAATTCTACGTCATTGGTGGAGTGGGAGGAAGTGAAGCTAAGGTTCTTACATGCGGGGAAGAGTACGATTTAGACACTGGAAAATGGACTGAAATCCCCAACATGTCGCCTGGGCGGAGTGGTGCAGCTAGGGAGGGTGATATGCCAGCAGCAGCTGAAGCTCCCCCTCTTCTTGCTGTGGTGAATGATGAACTCTATGCTGCAGATCACGCTGAGATGGAGGTTAGGAAGTATGACAAAGTGAGAAGGACATGGTTTACTGTTGGGAGGTTGCCTGAACGAGCTGTATCAACGAATGGTTGGGGGCTTGCGTTTAGAGCATGTGGAGATAGGCTGATTGTTATTGGTGGACCGAGGGCGATGGGGGAAGGGTATATAGAGCTGAACTCATGGGTGCCAAGTGAAGGCCCTCCAAGGTGGGATTTGCTTGCGAGGAAGCCATCTGCTAGCTTTGTGTATAACTGTGCTGTGATGGGATGCTAA 1749 46.6 MVRSVSNLLQPKFTVGVRSVKFDFVEESFFKFYFNSIHRRLDGGRVPENSLFFIFSAYILDRTVHSRRHPPPLEGIPADFWKGERRKKVDGEKVGPISAFSRVFIFRGENPEDEERQNQRDQFLRLFFFSFFIVFPLEREGNIGSDWNSEISPFLLVASERDMLEDRSFLASRVFSSSCQHETQWPCFNLTYRLEAGMGNGKRPSDHDADELHRNVRPRSSWDSGDSSDSGSLISSIGRDNSINCLIRCSRSDYGSLASLNRSFRSLIRSGELYKLRRLNDVIEHWVYFSCHLLEWEAFDPNQRRWMHLPRMDSNECFMCSDKESLGVGTDLLVFGKDLNSHVTYRYSILTNSWCPGVSMNDPRCLFGSASRGEIAILAGGCDSNGNILSSAELYNSETKTWVTLPNMAKPRKLCSGVFMDKKFYVIGGVGGSEAKVLTCGEEYDLDTGKWTEIPNMSPGRSGAAREGDMPAAAEAPPLLAVVNDELYAADHAEMEVRKYDKVRRTWFTVGRLPERAVSTNGWGLAFRACGDRLIVIGGPRAMGEGYIELNSWVPSEGPPRWDLLARKPSASFVYNCAVMGC 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9312458 9315481 - CmaCh18G011630.1 Cma18g01163 314501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01163 582 SUPERFAMILY Kelch motif 293 579 IPR015915 GO:0005515
Cma18g01163 582 Pfam Kelch motif 411 458 IPR006652 GO:0005515
Cma18g01163 582 Pfam Kelch motif 363 408 IPR006652 GO:0005515
Cma18g01163 582 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP11 222 582 - -
Cma18g01163 582 SMART kelc_smart 331 374 IPR006652 GO:0005515
Cma18g01163 582 SMART kelc_smart 375 422 IPR006652 GO:0005515
Cma18g01163 582 SMART kelc_smart 423 467 IPR006652 GO:0005515
Cma18g01163 582 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 222 582 - -
Cma18g01163 582 Gene3D - 280 569 IPR015915 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01163 - - - csv:101220882 773.081
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01646 Cma18g01163 CCT
Cma04g01646 Cma18g01163 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01118 Cma-Chr13:8343049 Cma18g01163 Cma-Chr18:9312458 1.41E-165 dispersed
Cma18g01163 Cma-Chr18:9312458 Cma20g00482 Cma-Chr20:2322965 7.56E-99 dispersed
Cma01g00776 Cma-Chr1:4194558 Cma18g01163 Cma-Chr18:9312458 2.64E-124 wgd
Cma18g01163 Cma-Chr18:9312458 Cma04g01646 Cma-Chr4:8308596 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g886 . Blo16g01122 . Bda11g01225 Bpe13g01419 Bpe10g00862 Bma14g01637 Bma15g00165 Cmo04g01725 Cmo18g01186 . Cma18g01163 . Car18g01072 . Cpe09g00167 Cpe01g01456 Bhi07g01584 Tan04g1095 . . . . . Cla05g02456 Cam05g2642 Cec05g2675 Cco05g2712 Clacu05g2645 Cmu05g2499 Cre05g2613 Cone13ag0964 Cone19ag0956 Cone6ag0600 Cone9ag0605 Lsi04g00439 Csa05g02435 Chy10g00988 Cme10g00430 Blo06g00901 . Bda07g01463 Bda11g01225 Bpe11g01636 . . Bma06g00678 . . . Cma04g01646 . Car04g01687 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003256 3 4 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 0 1 1 1 1 3 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01163 Cma_Chr18 FPKM 20.56492 22.302843 53.492664 52.161591 11.06637 9.709599 11.670736 45.108189 42.514767 46.93108