Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01164 ATGTCGTCCAGAAGCTCGCGTTCTAGGCGCTCATCTGTGCCTTCTAGCAACATTTCTGATGAACAAATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGATTCGCAATGCCCGTTCCTCCTCCAGGGTATCAGCTTCAAAGGTTCTTCAAGAGACCTGCAACTACATAAGAAGCTTACAAAGAGAGGTGAGCGACTTAAGCGACCGATTATCAGAGCTGTTGCTATCAACTGACCCTGAAAGTGCTCAGGCTGCCATTATTAGAAGCTTACTCATTCAATTCGATTGTCTCCTCCGCAAGTTACATTTCAACGGGACAAGAGACGAATCAATTTACTGTCGCAGCGAAAACATGAATCCTGGTGGGTATACGGTTGAAGTGACGGGCTTGTCTCCTAAAGCAACGGAGAAGGATATCCTCGATTTCTTCGCTTTCTCTGGCGCAATCGAGCTCGTTGAGATTGTGAGGTCTGGTGAAGATGCCTGCACTGCATATGTGTCATTCAAAGATGCTTACTCTCAAGAGACTGCTTGCCTGCTGAGTTTTGTGAGCTTCAACTGTTTGAGTTTGATCATTCTGTTTATGTTCTGTCTACTATTTGGTTTTCAATCAACAATCGTTTCTGGTGATTTGGTTAATGAACATGTTGTAGAGTCCAATATCTGTTCATTGCAGGGTGCAACAATTGTAGATCAACGAGTGTGCATAACACGGTGGGGACATTTTGATGAAGAATTTGATTTCTGGAGCAGGCCTTCCGGTTACCATGAAGAAGACGGTACTCCTGCTTCGGCTCAAAGAAGTCAGTTTGCTTCCACCACTGGAACCGCAGTGTCCATGGCCCAGGACGTAGTCAAAACCATGCTGGCCATGGGTTACGTGCTGGGCAAAGATACATTTACAAAAGCCAAAGCATTTGATGAATCTCATCAGGTCTCAGCAACCGCAGCAGCTAAGGTAGCTGATTTGAGTAACAGAATTGGCCTTACTGACATGATTGGTGCAGGGTATGAAGCGGCTAAAACCATGGATGAGAAGTACCACGTATTGCAGACAACCAAATCTGCTATATCAGCCACTGGAAGAACAGCTGCTGCTGCTGCTGATACGGTGGTCAGGAGTAGCTACTTCTCCAGGGGAGCTCTTTTCATTTCTGATGCCCTGAATCGAGCTGCCAAAGCTGCAGCTGACTTGGACTCTATAGGGAGGCCATATGGATGGATGCATGATTTGGGCGCAGCAAGAATGAAGTCCCGTAAGCAATATCATGATTTTGCCGCCTTGGATGGTTCCTTCCAGCTGCAATTGTCTGAGACTTGCAGCTTGCTCCAGCAGGCAATAGCTTCCTACAAGTTACAGACGGCGGCGATCGCAGCTCCGGCAGTCATCATGACGAGCAATGGGATGGCTTTTTTTCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCATGATCATCACCACTCTTCTCCTCCGTCTCTCAACCCAATTCTACCTTCTTGCACACCCCAAGAATTCCATGGTGTTGCATCATTTCTAGGAAAACGATCCATGTCATTTTCAGGAGCAGAAATGGTGGAAGAAGGAAATAACGGTGAGGATGAATTCTCTGATGATGGATCACAGGCAGGTGAGAAAAAGAGGAGACTTAACATGGAGCAAGTCAAAACACTTGAGAAAAACTTCGAACTGGGAAATAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCTCTTGGTCTACAGCCCAGACAGATAGCTATCTGGTTTCAAAACAGGAGGGCGCGGTGGAAGACTAAGCAGCTAGAGAAAGACTACGATGTTCTTAAAAGACAATTTGAAGCTATGAAATCAGATAATGAAGCCCTCAAATCCCACAACCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAGCCAACGGAATCAATCAATCTGAACAAAGAAACAGAAGGGTCTTGCAGTAACAGAAGTGAAAACAGCTCTGATAACATCAAATTGGACATCTCAAGAACACCAGCCATTGATAGCCCTCATCAGCATCAGCACCACCCAACAGACAGGCCACTTTTTCCCACCTCCTTAAGGCCTCCAGCTTTGGCTCAGCTCTTTCAAACCTCCTCAAGATCGTCAGACCCACCAAAGCCACTTGATAACAACAATCATCCTCAAATTGCTAAAGAAGAAAGCAGCAGTTTGTCCAACATGTTCTGTGGAATGGATGATCACTCTGGTTTTTGGCCTTGGTTGGAGCAGCAACATTTCAACTGA 2292 45.55 MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVSDLSDRLSELLLSTDPESAQAAIIRSLLIQFDCLLRKLHFNGTRDESIYCRSENMNPGGYTVEVTGLSPKATEKDILDFFAFSGAIELVEIVRSGEDACTAYVSFKDAYSQETACLLSFVSFNCLSLIILFMFCLLFGFQSTIVSGDLVNEHVVESNICSLQGATIVDQRVCITRWGHFDEEFDFWSRPSGYHEEDGTPASAQRSQFASTTGTAVSMAQDVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSNRIGLTDMIGAGYEAAKTMDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFISDALNRAAKAAADLDSIGRPYGWMHDLGAARMKSRKQYHDFAALDGSFQLQLSETCSLLQQAIASYKLQTAAIAAPAVIMTSNGMAFFPANFMLQTSHEDHDHHHSSPPSLNPILPSCTPQEFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFEAMKSDNEALKSHNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHHPTDRPLFPTSLRPPALAQLFQTSSRSSDPPKPLDNNNHPQIAKEESSSLSNMFCGMDDHSGFWPWLEQQHFN 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9324568 9336161 + CmaCh18G011640.1 Cma18g01164 314502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01164 763 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 81 IPR036638 GO:0046983
Cma18g01164 763 MobiDBLite consensus disorder prediction 653 675 - -
Cma18g01164 763 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 62 IPR011598 GO:0046983
Cma18g01164 763 SUPERFAMILY RNA-binding domain, RBD 124 182 IPR035979 GO:0003676
Cma18g01164 763 Coils Coil 597 645 - -
Cma18g01164 763 CDD homeodomain 550 606 IPR001356 GO:0003677
Cma18g01164 763 Gene3D - 7 88 IPR036638 GO:0046983
Cma18g01164 763 PRINTS Lambda-repressor HTH signature 576 585 IPR000047 GO:0003677
Cma18g01164 763 PRINTS Lambda-repressor HTH signature 585 601 IPR000047 GO:0003677
Cma18g01164 763 ProSiteProfiles 'Homeobox' domain profile. 545 605 IPR001356 GO:0003677
Cma18g01164 763 Pfam Homeobox associated leucine zipper 605 645 IPR003106 GO:0006355|GO:0043565
Cma18g01164 763 Gene3D - 542 611 - -
Cma18g01164 763 MobiDBLite consensus disorder prediction 706 738 - -
Cma18g01164 763 Pfam Homeodomain 550 603 IPR001356 GO:0003677
Cma18g01164 763 SUPERFAMILY Homeodomain-like 540 607 IPR009057 -
Cma18g01164 763 Gene3D - 110 189 IPR012677 -
Cma18g01164 763 Coils Coil 59 79 - -
Cma18g01164 763 SMART HOX_1 548 609 IPR001356 GO:0003677
Cma18g01164 763 ProSitePatterns 'Homeobox' domain signature. 580 603 IPR017970 GO:0000981|GO:0006355
Cma18g01164 763 MobiDBLite consensus disorder prediction 646 738 - -
Cma18g01164 763 Pfam Helix-loop-helix DNA-binding domain 22 63 IPR011598 GO:0046983
Cma18g01164 763 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 470 763 IPR045224 GO:0003700
Cma18g01164 763 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 470 763 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01644 Cma18g01164 CCT
Cma04g01644 Cma18g01164 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01645 Cma-Chr4:8301679 Cma18g01164 Cma-Chr18:9324568 6.29E-30 dispersed
Cma15g00281 Cma-Chr15:1338846 Cma18g01164 Cma-Chr18:9324568 9.46E-75 dispersed
Cma18g00121 Cma-Chr18:593424 Cma18g01164 Cma-Chr18:9324568 8.35E-25 dispersed
Cma18g01164 Cma-Chr18:9324568 Cma04g00841 Cma-Chr4:4319927 2.63E-37 dispersed
Cma20g00925 Cma-Chr20:4526850 Cma18g01164 Cma-Chr18:9324568 1.77E-35 dispersed
Cma04g01644 Cma-Chr4:8294767 Cma18g01164 Cma-Chr18:9324568 6.46E-130 transposed
Cma04g02758 Cma-Chr4:18543307 Cma18g01164 Cma-Chr18:9324568 1.92E-66 transposed
Cma10g00183 Cma-Chr10:839320 Cma18g01164 Cma-Chr18:9324568 1.13E-22 wgd
Cma15g00279 Cma-Chr15:1326730 Cma18g01164 Cma-Chr18:9324568 5.87E-22 wgd
Cma18g01164 Cma-Chr18:9324568 Cma04g01643 Cma-Chr4:8287930 0 wgd
Cma18g01164 Cma-Chr18:9324568 Cma04g02756 Cma-Chr4:18528070 1.67E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36830 PF00046 Homeodomain 1.10E-14 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01164 K09338 - csv:101221595 528.865