Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01168 ATGGGGCGCTGCAAGAGCGCTTCACCCTCGCGCCAGCGGCCGACTGGGTGGCGCTGGACTCCGATACCAGCCCAATCCTCCGTCCATGCCGGCCAAGTGGTCCGTACGCTATGGATATGGAAAATGGAGAAACCACCTGATCCAACAACACCGACGCTACTGTTCATGGAGCTGTCGCTGGCAATTCTTATCTCTCTCGCTTTCAGTCAACTTCAACCGACAAAGCAAAACTACAAACGTTGCGAGAACCATTATGTTTCAACTGGACAACTTTCTCCAAGTGAAAGCAGAATCCTTTTCCAAATTCAAAAGCTTCTGGAATATCCTGTTGCTCTTCAACAATGGTCAAACTGGACCAACTTCTGTTATTTACCTCCTACTTCTTCACTCAGAATTGTCTGTTCTGGGACTCACATAACAGAATTAACTGTCATTGGGAACAAAACCTCCCCCTCCAAAACCCCAAAATCAGTTTCTGTGAGTTCCATCCCTTCTCAGCAGACTCTTTCCAATAGCTTCTCCATTGATTCCTTCTTTACTGTTCTCACCAAGCTTTCGAACCTGAAAGTGTTATCATTGGTGTCTTTGGGCTTGTGGGGTCCTTTTCCTTCCAAAATCAATAGGCTCTCATCTCTGGAAGTGCTTAACATAAGCTCAAATTTCATCTATGGAGGCATCCCTGAAACAATCTCTAAACTTCAAAGTCTCAAGAGCCTTGTTTTAACTGATAATTTGCTCAATGGAAGCGTTCCAGATCTTAACGGCCTTGCAGTTCTTGAAGAGCTGAATTTAGGACAAAATCAACTGAGCCAAAAAGTTCCACCTCTGAGTGGAACTCTTGTGATCGTCATATTGAGAAAAAACTTGTTCAGATCTGAAATTCCTTCAAGAATCGTGGAACTCAATAAGCTTCAACTATTGGATATTTCCTACAATAAGTTTCTTGGGCCAATCCATTCTTCTCTGTTCTCTCTACCTGCAATACAGTATCTGAACCTAGCTTATAACCAATTAAGTGGAGCACTCTCTGTCAACACAACTTGCAACAGAAACCTTAAGTTTGTAGACGTTTCCCACAACCTCTTGATAGGAAAGTTACCCTCTTGCATTGGGTCGAATTCGTCGAATCGTACGGTAAATATGTCATGGAACTGCTTGACAGGTGAAAACTCAAAGTTCCAGCATTCTCTTTCGTACTGCCGTAAGGAAGCAATGGCTGTAAAGCCTCCAGGTGACCTACAGAAACAGAAACCTGGCATCAAACTTGGTCTTATGCTTGCCGTCATAGGAGGCGTAGTGGTAGTTTCCGGTGTTGTTCTGTTATTGGTTTTTGCAATCATCCGAAACAGAAGAAGAAGAAGATTTGGAGAGATGAAATATGAGAAATCTACAGTTCATAAACAATCTGTTCGTGGCTCTCCACTGCCTAACCGACGAGTGCCACAGACAAGGCTACCAGCACTTGGGCTGCCGCCTTATCGGGTCTTCGCAGTGGAAGAGATTGAAGAGATCACAAGAAACTTCGACCCATCAAACTTGGCCGCTCAAGGATCCCAAGCACAGATTTATAAAGGGTGGCTGACTGATGGTTCAGTGGTTCTGATCAAATGCTTTAAACTAAAGCAAAAACTTGCACCTCAAGCCTTAGCACGGCACATGGAAGAGCTTCCAAATCTGAGGCATCGGCATTTGGTCAGTGTTGTTGGACACTGCACCGTCACTTACCAAGACCAATTGAACCCAGCCAGTACCGTCTTCGTTGTTAATGAATTCATATCCAACGGCTCATTGAAGGATTGTCTTACAGATTGGAAAAGGAAGGACGCTCTGAAATGGCCACAGAGAATGGGAATTAGCATCGGCATTGCCCGGGGAATACAGCATCTGCATACTGGAATGGCACGGGGCATCTTCGACAACAGTGTCACGATTGATAACATTTTGTTGGACGAGACGCTGACTGCAAAAATAAGCAATTACAACGTTCTCATGCCGCTAAAGGATGCAGAGAGCGGGTTGAATGTACCAAAAAGAAGTGGGAATCCGGAGAAGGAAGACATCTTTCAATTTGGTGCCATTTTGCTGCAAGTCATCACCGGTAGGCCGATCACATCCACAAGTGAACTGGATGATCTGAAGAGTGAGTTTGAAGGTGGCTTGGCAGAAGGACTGAAATTACGGGGCGTTATCGATCCTTCAATTCAGGGTTCTTTTGCATTTGATTCACTAAAGACGACAATTCAAATCGCCATCAACTGCCTCAACAAAGATCCAAACAAACGCCCTTCCATTGAAGATGTACTCTGGAATTTGCAGTATTCAATGCAAGTTCAGGAAGGATGGACAAGTAGTGGAAACCTCGGAGCTTTCATATAG 2376 44.57 MGRCKSASPSRQRPTGWRWTPIPAQSSVHAGQVVRTLWIWKMEKPPDPTTPTLLFMELSLAILISLAFSQLQPTKQNYKRCENHYVSTGQLSPSESRILFQIQKLLEYPVALQQWSNWTNFCYLPPTSSLRIVCSGTHITELTVIGNKTSPSKTPKSVSVSSIPSQQTLSNSFSIDSFFTVLTKLSNLKVLSLVSLGLWGPFPSKINRLSSLEVLNISSNFIYGGIPETISKLQSLKSLVLTDNLLNGSVPDLNGLAVLEELNLGQNQLSQKVPPLSGTLVIVILRKNLFRSEIPSRIVELNKLQLLDISYNKFLGPIHSSLFSLPAIQYLNLAYNQLSGALSVNTTCNRNLKFVDVSHNLLIGKLPSCIGSNSSNRTVNMSWNCLTGENSKFQHSLSYCRKEAMAVKPPGDLQKQKPGIKLGLMLAVIGGVVVVSGVVLLLVFAIIRNRRRRRFGEMKYEKSTVHKQSVRGSPLPNRRVPQTRLPALGLPPYRVFAVEEIEEITRNFDPSNLAAQGSQAQIYKGWLTDGSVVLIKCFKLKQKLAPQALARHMEELPNLRHRHLVSVVGHCTVTYQDQLNPASTVFVVNEFISNGSLKDCLTDWKRKDALKWPQRMGISIGIARGIQHLHTGMARGIFDNSVTIDNILLDETLTAKISNYNVLMPLKDAESGLNVPKRSGNPEKEDIFQFGAILLQVITGRPITSTSELDDLKSEFEGGLAEGLKLRGVIDPSIQGSFAFDSLKTTIQIAINCLNKDPNKRPSIEDVLWNLQYSMQVQEGWTSSGNLGAFI 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9362452 9366436 + CmaCh18G011680.1 Cma18g01168 314506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01168 791 Pfam Leucine Rich Repeat 211 233 IPR001611 GO:0005515
Cma18g01168 791 ProSiteProfiles Protein kinase domain profile. 508 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01168 791 Gene3D Transferase(Phosphotransferase) domain 1 592 783 - -
Cma18g01168 791 Pfam Protein tyrosine and serine/threonine kinase 515 666 IPR001245 GO:0004672|GO:0006468
Cma18g01168 791 PANTHER BNAC05G10630D PROTEIN 86 787 - -
Cma18g01168 791 Gene3D Ribonuclease Inhibitor 282 405 IPR032675 -
Cma18g01168 791 Gene3D Ribonuclease Inhibitor 92 281 IPR032675 -
Cma18g01168 791 Gene3D Phosphorylase Kinase; domain 1 482 579 - -
Cma18g01168 791 SUPERFAMILY Protein kinase-like (PK-like) 484 771 IPR011009 -
Cma18g01168 791 PANTHER OS07G0166700 PROTEIN 86 787 IPR045272 GO:0004714|GO:0006468
Cma18g01168 791 SUPERFAMILY L domain-like 168 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01168 - - - csv:101222534 1151.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00227 Cma-Chr18:1225170 Cma18g01168 Cma-Chr18:9362452 2.03E-121 dispersed
Cma18g01168 Cma-Chr18:9362452 Cma16g00137 Cma-Chr16:601086 7.85E-11 dispersed
Cma18g01168 Cma-Chr18:9362452 Cma07g01143 Cma-Chr7:6251111 1.41E-158 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g866 . . . . . Bpe10g00858 . Bma15g00250 . Cmo18g01192 . Cma18g01168 . Car18g01077 . Cpe09g00160 . Bhi07g01594 . . Lac13g0294 . . . Cla05g02463 Cam05g2650 Cec05g2685 Cco05g2719 Clacu05g2654 Cmu05g2506 Cre05g2622 Cone13ag0974 Cone19ag0964 . . Lsi04g00446 Csa05g02427 Chy10g00981 Cme10g00438 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012316 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69315 PF07714 PK_Tyr_Ser-Thr 5.10E-13 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01168 Cma_Chr18 FPKM 23.903378 27.270973 10.716037 11.080382 3.603088 3.927501 4.07023 2.585954 3.129688 2.482538