Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01169 ATGTCTACTCCTGCGAGGAAGAGACTGATGAGAGACTTCAGGAGGTTGCAACAAGACCCACCTGCCGGCATCAGTGGTGCTCCCCAAGACAATAATATCATGCTATGGAATGCTGTTATATTTGGACCAGATGATACACCTTGGGATGGAGGTACGTTTAAACTGACCCTTCAGTTCACTGAGGATTATCCAAATAAGCCACCGACAGTCCGTTTTGTCTCTAGAATGTTCCACCCTAACATTTATGCCGATGGAAGCATTTGTTTGGACATTCTGCAAAATCAGTGGAGCCCAATCTATGATGTAGCAGCTATACTCACCTCTATTCAGTCGTTGCTGTGCGACCCAAATCCAAGCTCCCCTGCTAATTCTGAAGCTGCTAGGATGTTTAGTGAGAATAAGCGCGAGTACAACAGGAGACCTTCTGATCGAGATAAACCGAGTATAGGAAACTTCAATAGCCTTGTGCTAGAACATGGCAATGCCGACGGCAAGAGAAGGCTGTCGGCATTTTCTTCAGCCTCCTTCCTTTTCAATTTCAATCCGGTGAGGATGTCTACTTCTGCAAGGAAGAGACTGATGAGAGACTTCAAGAGGTTGCAGCAAGATCCGCCTGCGGGCATCAGTGGTGCTCCTCAAGACAATAATATCATGCTATGGAATGCCGTTATATTTGGGCCTGACGATACACCTTGGGATGGAGGTACGTTTAAGCTGACTCTTCAGTTCACGGAGGATTATCCAAATAAGCCACCAACAGTCCGCTTTGTGTCAAGAATGTTCCACCCTAATATTTATGCTGATGGAAGCATTTGTTTGGACATTCTGCAAAATCAGTGGAGCCCAATCTATGATGTAGCTGCTATACTCACCTCTATTCAGTCGTTGCTGTGCGACCCGAATCCAAACTCTCCTGCGAATTCTGAAGCTGCTAGGATGTTTAGTGAGAACAAGCGTGAGTACAACAGGAGAGTACGTGAAATTGTGGAACAGAGTTGGACTGCTGATTAG 1011 45.9 MSTPARKRLMRDFRRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPSSPANSEAARMFSENKREYNRRPSDRDKPSIGNFNSLVLEHGNADGKRRLSAFSSASFLFNFNPVRMSTSARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9366702 9375092 - CmaCh18G011690.1 Cma18g01169 314507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01169 336 SUPERFAMILY UBC-like 1 140 IPR016135 -
Cma18g01169 336 Gene3D Ubiquitin Conjugating Enzyme 183 332 IPR016135 -
Cma18g01169 336 Gene3D Ubiquitin Conjugating Enzyme 1 144 IPR016135 -
Cma18g01169 336 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 150 IPR000608 -
Cma18g01169 336 CDD UBCc 191 329 IPR000608 -
Cma18g01169 336 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 1 140 - -
Cma18g01169 336 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 175 336 - -
Cma18g01169 336 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 261 276 IPR023313 -
Cma18g01169 336 MobiDBLite consensus disorder prediction 129 146 - -
Cma18g01169 336 CDD UBCc 7 140 IPR000608 -
Cma18g01169 336 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 140 - -
Cma18g01169 336 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 77 92 IPR023313 -
Cma18g01169 336 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 188 334 IPR000608 -
Cma18g01169 336 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 175 336 - -
Cma18g01169 336 Pfam Ubiquitin-conjugating enzyme 8 140 IPR000608 -
Cma18g01169 336 Pfam Ubiquitin-conjugating enzyme 192 328 IPR000608 -
Cma18g01169 336 MobiDBLite consensus disorder prediction 118 149 - -
Cma18g01169 336 SMART ubc_7 7 150 - -
Cma18g01169 336 SMART ubc_7 191 334 - -
Cma18g01169 336 SUPERFAMILY UBC-like 178 334 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01169 K10573 UBE2A, UBC2, RAD6A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23] - pvy:116110250 317.005
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01638 Cma18g01169 CCT
Cma04g01638 Cma18g01169 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00589 Cma-Chr1:3090109 Cma18g01169 Cma-Chr18:9366702 5.46E-30 dispersed
Cma02g00486 Cma-Chr2:2561714 Cma18g01169 Cma-Chr18:9366702 1.92E-33 dispersed
Cma03g00177 Cma-Chr3:2334226 Cma18g01169 Cma-Chr18:9366702 4.14E-27 dispersed
Cma04g01639 Cma-Chr4:8263661 Cma18g01169 Cma-Chr18:9366702 3.33E-98 dispersed
Cma07g01124 Cma-Chr7:6113235 Cma18g01169 Cma-Chr18:9366702 5.48E-27 dispersed
Cma13g00136 Cma-Chr13:944488 Cma18g01169 Cma-Chr18:9366702 1.04E-26 dispersed
Cma18g01169 Cma-Chr18:9366702 Cma20g00301 Cma-Chr20:1476266 6.58E-41 dispersed
Cma20g00742 Cma-Chr20:3484983 Cma18g01169 Cma-Chr18:9366702 9.58E-09 dispersed
Cma20g00965 Cma-Chr20:4890424 Cma18g01169 Cma-Chr18:9366702 4.99E-30 dispersed
Cma18g01169 Cma-Chr18:9366702 Cma04g01638 Cma-Chr4:8259093 9.50E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g865 Blo01g00420 Blo16g01129 Bda01g02169 Bda11g01230 Bpe13g01427 . . . Cmo04g01716 Cmo18g01194 . Cma18g01169 . Car18g01078 . Cpe09g00159 Cpe01g01450 Bhi07g01596 Tan04g1110 . Lac13g0292 . . . Cla05g02464 Cam05g2651 Cec05g2686 Cco05g2720 Clacu05g2655 Cmu05g2507 Cre05g2623 Cone13ag0975 Cone19ag0965 Cone6ag0608 Cone9ag0612 Lsi04g00451 Csa05g02426 Chy10g00980 Cme10g00439 . . . Bda11g01230 . Bpe02g02356 Bma01g00086 Bma06g00663 . . . Cma04g01638 . Car04g01679 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001524 5 2 2 3 3 1 3 1 1 1 1 1 3 2 2 3 1 6 3 1 2 3 1 1 5 2 2 3 3 4 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01169 Cma_Chr18 FPKM 142.272125 149.649658 118.021606 116.304855 72.291451 67.469841 70.049255 246.211685 255.573242 253.709061