Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01170 ATGGCACAAGAAACGGTGGCTAAGTATTCTGCATTGTCAAACTGTGAATCTTACTTTGAGCGCATTCAATCCACGAAGAAACTTCCAAAACCCTTACAGGAGACGCTCAATCATGCGTTTTCCAGGATCCCAGTTTCATCGTTTCCTGGAGTTCCAGGAGGCAAAGTTATTGAGATTCCAGCAGACACAACTATTGCTAATGCTGTGAAGATTCTATCTGAATGCAAAATTTTATCAGCTCCTGTAACGAATCCAAATGCAAGAGAAAATATGAGTTGGAGAGATAGGTACCTAGGGATTGTAGATTATTCGGCGATTATCTTGTGGGTGTTGGAGAGTGCGGAACTTGCCGCGGCTGTTTTATCCGCTGGTTCAGCCACGGCTGTTGGAGTTGGTGCAGGGGCAGTTGGTGCTATTGGAGCGATGGCATTAGGTGCCACAGGCCCCGTTGCAGTTGCAGGGATAGCTGCAGCCGCGGTGGGAGCTGCTGTGGCTGGTGGAGTTGCTGTTGACAAAGGGATCGGTAAGGATGCTCCCACGGCTGCTGATAGTTTAGGAGATGACTTTTACAAAGTCCTACTACAAGAAGAACCGTTCAAATCAACAACTGTCGAGTTAATATTGAAATCCTACCGCTGGGTTCCATTTCTTCCGGTGACCCAAGACAATTCCATGTTGTGTATCTTACTGCTACTCTCAAAATATAGATTGAGGAATGTTCCTGTCATTGAATCAGGAAAACCCGGCCTCAAGAATTACATAACTCAATCTGCAATAGTTCAGGGTCTTCAAAGGTGTAGAGGAAGGGACTGGTTCGACTGTATAGCTGCGAGACCCATTTCTGATTTGGGACTTCCTTTCATGTCATGTCACGACGTTATTAGCATCCAAAGCGAAGAGTTAATACTGGAAGCTTTCAAGAAAATGAGAGATAATCATATTGGGGGCCTTCCAGTCGTCGAGGGACCAAGGAAAAGGATTGTGGGAAATATAAGTATAAGAGACATAAGATATTTGCTGCTTACACCTGAACTTTTCTCCAATTTCAGGAAGCTTACTGTCATGGATTTCATCAAAATAGTTGCTACGTTTCCTGAAGATGTTGGAAGACTTGCCCCACCAATTACATGCAGACTTGAATCAACTCTTGGCTCTGTTATTAATAGTCTTGCTTCCAAGTCAGTCCACAGGATCTATGTGGTAGCTGGTGATGAGGAAGTGGTCGGGGTTATCACCCTAAGGGATGTGATCTCCTGCTTCATTTTTGAACCACCCAACTACATAATCAACCACTTTGGATTCTCCGCCGAAGAAATGTTGAATGAGCCACAGCTATAA 1338 44.54 MAQETVAKYSALSNCESYFERIQSTKKLPKPLQETLNHAFSRIPVSSFPGVPGGKVIEIPADTTIANAVKILSECKILSAPVTNPNARENMSWRDRYLGIVDYSAIILWVLESAELAAAVLSAGSATAVGVGAGAVGAIGAMALGATGPVAVAGIAAAAVGAAVAGGVAVDKGIGKDAPTAADSLGDDFYKVLLQEEPFKSTTVELILKSYRWVPFLPVTQDNSMLCILLLLSKYRLRNVPVIESGKPGLKNYITQSAIVQGLQRCRGRDWFDCIAARPISDLGLPFMSCHDVISIQSEELILEAFKKMRDNHIGGLPVVEGPRKRIVGNISIRDIRYLLLTPELFSNFRKLTVMDFIKIVATFPEDVGRLAPPITCRLESTLGSVINSLASKSVHRIYVVAGDEEVVGVITLRDVISCFIFEPPNYIINHFGFSAEEMLNEPQL 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9376211 9378818 - CmaCh18G011700.1 Cma18g01170 314508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01170 445 ProSiteProfiles CBS domain profile. 368 428 IPR000644 -
Cma18g01170 445 CDD CBS_pair_SF 291 417 - -
Cma18g01170 445 Gene3D - 275 423 IPR046342 -
Cma18g01170 445 SUPERFAMILY CBS-domain pair 35 263 IPR046342 -
Cma18g01170 445 ProSiteProfiles CBS domain profile. 50 116 IPR000644 -
Cma18g01170 445 ProSiteProfiles CBS domain profile. 288 347 IPR000644 -
Cma18g01170 445 Pfam CBS domain 291 340 IPR000644 -
Cma18g01170 445 Pfam CBS domain 373 418 IPR000644 -
Cma18g01170 445 PANTHER BNAANNG38820D PROTEIN 7 441 - -
Cma18g01170 445 SMART cbs_1 55 111 IPR000644 -
Cma18g01170 445 SMART cbs_1 215 264 IPR000644 -
Cma18g01170 445 SMART cbs_1 292 341 IPR000644 -
Cma18g01170 445 SMART cbs_1 373 421 IPR000644 -
Cma18g01170 445 Gene3D - 52 267 IPR046342 -
Cma18g01170 445 CDD CBS_pair_SF 55 112 - -
Cma18g01170 445 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 7 441 - -
Cma18g01170 445 SUPERFAMILY CBS-domain pair 253 426 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01170 - - - csv:101202737 694.886
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01636 Cma18g01170 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00066 Cma-Chr10:252314 Cma18g01170 Cma-Chr18:9376211 3.79E-86 dispersed
Cma11g00036 Cma-Chr11:164586 Cma18g01170 Cma-Chr18:9376211 9.96E-86 dispersed
Cma14g01359 Cma-Chr14:10566104 Cma18g01170 Cma-Chr18:9376211 6.54E-08 dispersed
Cma02g00389 Cma-Chr2:1971457 Cma18g01170 Cma-Chr18:9376211 1.27E-12 transposed
Cma18g01170 Cma-Chr18:9376211 Cma04g01636 Cma-Chr4:8253751 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g862 . . . . . . Bma14g01634 . Cmo04g01714 Cmo18g01195 . Cma18g01170 . Car18g01079 Sed08g0035 Cpe09g00157 Cpe01g01449 Bhi07g01598 Tan04g1112 Cmetu10g1744 Lac13g0290 . . . Cla05g02467 Cam05g2652 Cec05g2687 Cco05g2721 Clacu05g2656 Cmu05g2508 Cre05g2624 . Cone19ag0967 . . Lsi04g00452 Csa05g02423 Chy10g00979 Cme10g00442 . . Bda07g01459 . Bpe11g01631 . . . . . . Cma04g01636 . Car04g01677 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009000 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 0 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01170 Cma_Chr18 FPKM 0.680548 0.684867 0.0 0.0 0.0 0.0 0.0 0.052576 0.0 0.0