Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01172 ATGAAGATGATGATCGTCCTTCCCAGCTGCTGGCTTGGAACATGGAGCAGCCATTTGATTGCTGCGAGTTCAATGAACAGCCTGAGATTCATTCTGAAACAAGGACAAGGGTTGGCTTCTTTGAATTTGCAGCTAAAAGAGAGAGGAAGTGGCAGCAGGGGGATCATGTCGACCATTGTACTCGATCCTCTTCTCTATCACTGCGGGAAAGGGAAACAGAGATTCCAACGCCGTCCTAAATTCAATCCGCTCAAATCTTGTTCTTCCTTTACTTACTGTACCAATAAGCTTCTTTACCGTGGCCGAAGGACCTTTTTCAATCGCAATTCTTGTAAGCTTCCTGTTCTTAGAGCTAGCTCAACTAATGCGGGTCTCCTTGAACCCTTTGAATCGACGGATGTTTTGCTCACGGAGACGTTCTTTATTAAGCGTACTGAAAAGTTGGAGGGGAAGATCTCCGTCGGACTAGCCCAGGGAAAGAACCAGAATCAGTGGGAGCTTACTATTGGATGTAACCTTTCTGGGAAATGGATTCTTCATTGGGGTGTGTCCTTAATCGATGATAGTGGCAGCGAATGGGATCAACCTCCTAAAGAAATGATACCCCCTGGTTCAATACCGATCAAAGATTATGCTATTGAGACACCATTGAAAAAATCATCCTCATCTGCTTTGGGAGATGCTGTTCATGAAGTGAAGATAGACCTTGTCCCTGACAAAGCAATTGCAGCTATAAATTTTGTTTTGAAGGATGAAGAAACTGGAACTTGGTATCAGCACAAAGGGAGAGATTTCAAGGTGCCTCTTTTAGGCTACCATGGTGGTGATGGCAATATAGTTGGAACGAAAAAGGGCTTGAACTTATGGCCAGGGGCTTTGGGTCAGCTATCCAACCTCATTGTTAAACCAGAACCAAATTCTAAAGGTCAAGAAAGCAGTGGTGAATCTGGAGATACAAAGGAGAAGAATTATTTGGAAGGATTCTACGAAGAGCTGCCTATTGTAAAAGAAGTGGCTGTTGATAACTCGGTCAGTGTTACAGTCAGGAAGTGTCCCGAAACAACTAAATATGTTTTGTATTTGGAAACTGATGTACCTGGAGATGTTACTGTTCATTGGGGAGCGTGCAGGGATGAGACTAGGAAATGGGAGATTCCAGCTGCTCCTCATCCTCCAGAAACAACAGTGTTCAAGAAAAAGGCCTTGCGTACCCCACTACAGCCGAAAAAAGACGGGAAGGGAAGTTGTGGAATTTTCACCGTGGAAGAAGAATTTGGAGGTTTTCTTTTTGTTCTCAAGCAAAATGAGAATTCTTGGTTAAACAACCAGGGAGAGGACTTCTACATCCCCTTCTCAAGCTCTGGTAACATGCCTGTTCAAAAGAAACAGATCAAATTAGAAGATACAGGAGTATCTATAAAATCTGGAGAAGGATCTGAGGGAGTTTCTGTCACTGCTTATACTGTTGGAATTATCAAGGAGATAAGAAATTTGGTTACTGACATTTCTTCTCAGAAGACTCCAAAGAAAAAAACCAAAGAAGCACAAGAAAGCATTCTTCAGGAAATTGAAAAACTGGCTGCTGAAGCCTATAGTATTTTCAGAAGTTCTACTCCGACTTTTACAGAGGAAATACTTGAGACTCCTAAACCTGTAGAACCACCCGTGCAAATTTCCTCTGGCACGGGTTCAGGTTTTGAAATATTGTGTCAAGGGTTTAATTGGGAATCTCACAAGTCCGGAAGATGGTACATGGAACTTAAAGAGAAAGCAGCAGAATTATCCTCACTTGGCTTCACCGTGTTATGGCTGCCACCTCCAACTGAATCTGTGTCACCAGAGGGGTACATGCCAAAGGACTTGTATAATTTAAATTCCAGATATGGTAACATTGATGAGCTAAAGGATGTTGTGAAGACATTCCATGATGTTGGGATAAAGGTTCTTGGTGATGTTGTCCTAAATCATCGTTGTGCACAATTTCAAAATCAAAATGGTATTTGGAATATATTTGGTGGTCGCTTAAATTGGGATGATCGTGCCATAGTTTCAGATGATCCTCATTTTCAGGGTAGGGGCAACAAAAGTAGTGGAGACAACTTCCATGCTGCTCCTAACATTGATCATTCACAAGATTTTGTGAGAAATGATATCAAGGAGTGGTTGTGCTGGTTAAGAAAGGAAATTGGGTATGATGGGTGGAGGCTTGATTTTGTCAGAGGATTCTGGGGTGGTTATGTGAAGGATTACTTGGATGCCAGCGAACCTTACTTTGCTGTAGGCGAATACTGGGATTCCCTTAGCTATACGTATGGTGAGATGGATCATAATCAAGATGCTCATAGACAGAGAATTGTTGACTGGATAAATGCTACTAATGGAACTGCTGGGGCATTTGATGTTACTACCAAAGGGATTCTTCATTCTGCACTTCAGAGATGTGAATATTGGCGATTATCAGATCAGAAAGGAAAGCCTCCAGGAGTTGTTGGATGGTGGCCTTCTCGTGCTGTTACCTTTATAGAGAATCATGACACTGGATCTACTCAGGGTCATTGGAGATTTCCTGGTGGAAAGGAAATGCAAGGGTATGCTTACATCCTGACTCATCCAGGGACACCATCAGTATTCTTTGACCACATTCTCTCCCATTACAAATCTGAAATTGCAGCACTTATTACTCTCAGACAACGAAATAAAGTTAATTGCCGGAGTGCAGTCAAAATTCAGAAGGCAGAAAGGGATGTCTATGCAGCCACCATTGATGATAAGGTTGCAGTGAAGATCGGTCCAGGCCATTTCGAACCTCCTAGCATATCCGGTGGATGGTCGTTAGTTATCGAAGGAAACGATTACAAGGTTTGGGAAGTGTCCAAGTAA 2880 42.57 MKMMIVLPSCWLGTWSSHLIAASSMNSLRFILKQGQGLASLNLQLKERGSGSRGIMSTIVLDPLLYHCGKGKQRFQRRPKFNPLKSCSSFTYCTNKLLYRGRRTFFNRNSCKLPVLRASSTNAGLLEPFESTDVLLTETFFIKRTEKLEGKISVGLAQGKNQNQWELTIGCNLSGKWILHWGVSLIDDSGSEWDQPPKEMIPPGSIPIKDYAIETPLKKSSSSALGDAVHEVKIDLVPDKAIAAINFVLKDEETGTWYQHKGRDFKVPLLGYHGGDGNIVGTKKGLNLWPGALGQLSNLIVKPEPNSKGQESSGESGDTKEKNYLEGFYEELPIVKEVAVDNSVSVTVRKCPETTKYVLYLETDVPGDVTVHWGACRDETRKWEIPAAPHPPETTVFKKKALRTPLQPKKDGKGSCGIFTVEEEFGGFLFVLKQNENSWLNNQGEDFYIPFSSSGNMPVQKKQIKLEDTGVSIKSGEGSEGVSVTAYTVGIIKEIRNLVTDISSQKTPKKKTKEAQESILQEIEKLAAEAYSIFRSSTPTFTEEILETPKPVEPPVQISSGTGSGFEILCQGFNWESHKSGRWYMELKEKAAELSSLGFTVLWLPPPTESVSPEGYMPKDLYNLNSRYGNIDELKDVVKTFHDVGIKVLGDVVLNHRCAQFQNQNGIWNIFGGRLNWDDRAIVSDDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRNDIKEWLCWLRKEIGYDGWRLDFVRGFWGGYVKDYLDASEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSALQRCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPGGKEMQGYAYILTHPGTPSVFFDHILSHYKSEIAALITLRQRNKVNCRSAVKIQKAERDVYAATIDDKVAVKIGPGHFEPPSISGGWSLVIEGNDYKVWEVSK 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9385903 9395509 - CmaCh18G011720.1 Cma18g01172 314510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01172 959 SUPERFAMILY Glycosyl hydrolase domain 901 956 - -
Cma18g01172 959 PRINTS Alpha-amylase signature 645 656 IPR006046 GO:0004556|GO:0005975|GO:0043169
Cma18g01172 959 PRINTS Alpha-amylase signature 731 742 IPR006046 GO:0004556|GO:0005975|GO:0043169
Cma18g01172 959 PRINTS Alpha-amylase signature 835 847 IPR006046 GO:0004556|GO:0005975|GO:0043169
Cma18g01172 959 SMART alpha-amyl_c2 897 957 IPR012850 GO:0004556|GO:0005509|GO:0005975
Cma18g01172 959 Pfam Alpha amylase, catalytic domain 594 847 IPR006047 GO:0005975
Cma18g01172 959 SUPERFAMILY (Trans)glycosidases 568 883 IPR017853 -
Cma18g01172 959 Gene3D - 901 957 IPR013780 -
Cma18g01172 959 SMART aamy 567 896 IPR006047 GO:0005975
Cma18g01172 959 CDD AmyAc_arch_bac_plant_AmyA 568 907 - -
Cma18g01172 959 PANTHER ALPHA-AMYLASE 137 958 - -
Cma18g01172 959 Pfam Alpha-amylase C-terminal beta-sheet domain 898 956 IPR012850 GO:0004556|GO:0005509|GO:0005975
Cma18g01172 959 Coils Coil 509 529 - -
Cma18g01172 959 Gene3D Glycosidases 567 900 - -
Cma18g01172 959 PANTHER ALPHA-AMYLASE 3, CHLOROPLASTIC 137 958 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01633 Cma18g01172 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00228 Cma-Chr9:968379 Cma18g01172 Cma-Chr18:9385903 7.01E-97 dispersed
Cma18g00782 Cma-Chr18:6913247 Cma18g01172 Cma-Chr18:9385903 2.70E-07 dispersed
Cma01g00451 Cma-Chr1:2272890 Cma18g01172 Cma-Chr18:9385903 6.79E-178 wgd
Cma18g01172 Cma-Chr18:9385903 Cma04g01633 Cma-Chr4:8233692 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01172 K01176 - csv:101202976 1606.65