Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01174 ATGGAGGTAATAGCTGAAGATGGGAAAGTTGTGTCTCGGGTAGTGACCGAATCGAAGGGGACGAAGAAGCAGAAGAACAACAAAGAACAGGTTGAAACTGTGGAAGAGGAAACTGGCTGTTGGATTGCTCTGAGGATTTTTCGTAGCTGCATTTCTTCGAGATCCAAAGTTGATAGTTCGATTAGTGGGACTAGTATTAACTATGCTGAAAGCAAGTCTACGGTGGATTCGAGTAGAGACCAGCCGACGCCTCAAGAGATATCTTCTACAAACACAAGTATGAGTAATGCAGAGAGTAATTCATCCACTTCCAAACTAGAAGAGGAACTTAAAATATCTCCTCATCTACGGAAATTTTCATTCAATGATCTTAAGTTGGCAACAAGGAACTTCAGACCGGAGAGTCTTCTTGGTGAGGGCGGTTTTGGTTGTGTTTTTAAGGGTTGGGTTGAAGAAAACGGAACTGCTCCAGTTAAACCTGGCACAGGACTCACTGTTGCTGTTAAAACGCTCAACCATGATGGTCTTCAAGGCCATAAAGAGTGGATGGCTGAGGTGAATTTTCTTAGTGATCTCAAACATCCCAACTTGGTCAAACTTATCGGTTACTGCAACGAAGATGATCAAAGACTGCTTGTATATGAGTTCATGCCCAGAGGAAGCCTGGAGAATCATCTTTTCCGGAGATCTCTACCTCTTCCGTGGTCTATTAGGATGAAAATTGCACTAGGTGCTGCCAAGGGTCTTGCTTTTCTTCACGAAGAAGCGAAAAGGCCGGTTATATATCGTGATTTCAAAACGTCCAACATCCTATTAGACGCAGAATACAATGCCAAGCTTTCTGATTTTGGACTTGCAAAAGATGGGCCCGACGGAGATAAAACCCATGTCTCTACACGTGTGATGGGAACGTATGGCTATGCAGCTCCAGAATACGTAATGACTGGACATCTTACATCAAGGAGTGATGTGTATAGTTTCGGAGTCGTTCTTCTTGAAATGTTAACTGGCAGAAGATCCATGGACAAAAACCGTCCTAATGGTGAACATAATCTTGTCGAGTGGGCACGGCCATACCTAGGAGAGAAAAAGAGATTCTATCGTTTGATAGACCCTAGGCTTGAAGGTCATTTCTCAATTAAAGGTGCTCAAAAGGCAGTACAATTGGCTGCTCAATGCCTTAGCCGAGATCAAAAGGTCAGGCCCTTAATGAGTGAAGTTGTTGAAGCCTTGAAACCTCTCCCAAACCTCAAGGACATGGCAAGTTCATCTTATTATTTTCAGACAATGCAAGCCGACCGCGTCCGATCGAGCCCAATGGCGAGAAATGGCTACCACACAGCTGCAGGACCAGTTCCAAAGAACGGGCAGCAACTACGCAGCCATTCAATCGCCAATGGATCTCATGCTTCTCCATATCATCAGCAGCAGCAACCCCATCCATCTCCAAAACCCAATGTCAAACCCTGA 1470 44.63 MEVIAEDGKVVSRVVTESKGTKKQKNNKEQVETVEEETGCWIALRIFRSCISSRSKVDSSISGTSINYAESKSTVDSSRDQPTPQEISSTNTSMSNAESNSSTSKLEEELKISPHLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLSDLKHPNLVKLIGYCNEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAKRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPDGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPYLGEKKRFYRLIDPRLEGHFSIKGAQKAVQLAAQCLSRDQKVRPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRVRSSPMARNGYHTAAGPVPKNGQQLRSHSIANGSHASPYHQQQQPHPSPKPNVKP 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9397046 9399960 - CmaCh18G011740.1 Cma18g01174 314512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01174 489 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 64 478 - -
Cma18g01174 489 MobiDBLite consensus disorder prediction 69 107 - -
Cma18g01174 489 ProSitePatterns Protein kinases ATP-binding region signature. 137 169 IPR017441 GO:0005524
Cma18g01174 489 CDD STKc_IRAK 137 414 - -
Cma18g01174 489 ProSiteProfiles Protein kinase domain profile. 131 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01174 489 MobiDBLite consensus disorder prediction 69 103 - -
Cma18g01174 489 MobiDBLite consensus disorder prediction 437 489 - -
Cma18g01174 489 SUPERFAMILY Protein kinase-like (PK-like) 107 411 IPR011009 -
Cma18g01174 489 Gene3D Phosphorylase Kinase; domain 1 89 216 - -
Cma18g01174 489 SMART serkin_6 131 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01174 489 Gene3D Transferase(Phosphotransferase) domain 1 217 433 - -
Cma18g01174 489 MobiDBLite consensus disorder prediction 454 477 - -
Cma18g01174 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Cma18g01174 489 PANTHER OS01G0588500 PROTEIN-RELATED 64 478 - -
Cma18g01174 489 Pfam Protein tyrosine and serine/threonine kinase 135 411 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01633 Cma-Chr4:8233692 Cma18g01174 Cma-Chr18:9397046 0 dispersed
Cma10g00532 Cma-Chr10:2436574 Cma18g01174 Cma-Chr18:9397046 2.95E-178 dispersed
Cma11g00529 Cma-Chr11:2542611 Cma18g01174 Cma-Chr18:9397046 0 dispersed
Cma18g01174 Cma-Chr18:9397046 Cma20g00399 Cma-Chr20:1913161 1.29E-157 dispersed
Cma15g00284 Cma-Chr15:1345263 Cma18g01174 Cma-Chr18:9397046 0 wgd
Cma18g01174 Cma-Chr18:9397046 Cma04g02754 Cma-Chr4:18515247 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69316 PF07714 PK_Tyr_Ser-Thr 9.90E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01174 - - csv:101203209 910.598