Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01183 ATGGAAGTCGACGCCGACGGCGAGCAAGAGATATGGAGTTGGGGGGCAGGAACCGACGGGCAGCTGGGCACCGGGCGACTCGAGGATGAGATCCTCCCTCAACTCCTCCGGATTCCGTCACTCTCCTCTGGCGCCGTCGTTTCATCCGTGTCCTGCGGCGGCGCTCATGTCATCGCTTTGACTGCTGGAGGAGGGGTGCTTACATGGGGAAGAGGCAATTCAGGGCAGTTGGGGCTAGGGGACATGGTGAGCAGCTTAGAACCTAAGCCAGTGATGGGGTTGGAAGGCTGCTTCATAACCCATGTTTCTGCGGGATGGAGCCATTCTGGTTTTGTTTCAGATGAGGGAAAGGTTTATAGTTGTGGGGATGGCTCATTTGGGCAGTTAGGGCATGGGGATTTCCAGTCACGTTGCTTCCCTGATGAACTCTTGTTTTTCTCTGATAAACATGTTGATCAGATTGCATGTGGGATGCGCCACTCGCTTGCATTGGTGAAAGGTTGTTGTGGTGCTCAAGTTTATGGATTTGGAGCTGGGAAGCGAGGTCAATTGGGCATCTCCAAGAAGATTCAATCTGTTAATCTTCCCGTTCTATCTTCAGAATTGGAAGCTGCTGAAATAGTCGGCATAGCTGCAGCTGGAGATCACAGTGCTGCGCTATCCAGTAAGTTACAATTACAGAGTCTGTTAAGAACATTCTGCTTAACCCCTGTTAATTTCCCATCTCTTCGTTCTGTATTGGCTATTACTTTAGCTGATGGGCGTCTCTTTACGTGGGGACGAGGATTCAGAACGAATTCGGATGCATTTTCTCCTCAATATCTTCCTTCACCATTGTCGTTCAGGAAAGTTGCTCTTGGATGGAACCATGCACTAGTTTTAACTGATGAAGGGGAACTTTATATGCTTGGTGGCAAACATCACGGAACCTTGAGCGATTCTGAAAAGCTCAATGCCACGAATTCTCTGCCCGGTGCTACAAATGAAGACAATTTCCGAGCAGTCCCTGCTGGTGGAATAAAAATCTTGGATATCGCAGCCGGGGCTGAGCATTCTGTGGTGGTTACAGGCATGGTTTTCCGAAAGGATGGAGCTGTAAAGACATGGGGCTGGGGGGAGCATGGTCAGCTGGGTTTGGGAGATACATGTGACCACACCAACCCACAAACAGTTTTTCTGCGCCACAAACTTGAGAGTGCAGATTTTGACGTCAAAGTTTATTCTGGCAGCGGCTTTACTGTTGCCATTACAACGCCCCATGCGGCTGCAAAGCTCACCAATTGA 1284 49.77 MEVDADGEQEIWSWGAGTDGQLGTGRLEDEILPQLLRIPSLSSGAVVSSVSCGGAHVIALTAGGGVLTWGRGNSGQLGLGDMVSSLEPKPVMGLEGCFITHVSAGWSHSGFVSDEGKVYSCGDGSFGQLGHGDFQSRCFPDELLFFSDKHVDQIACGMRHSLALVKGCCGAQVYGFGAGKRGQLGISKKIQSVNLPVLSSELEAAEIVGIAAAGDHSAALSSKLQLQSLLRTFCLTPVNFPSLRSVLAITLADGRLFTWGRGFRTNSDAFSPQYLPSPLSFRKVALGWNHALVLTDEGELYMLGGKHHGTLSDSEKLNATNSLPGATNEDNFRAVPAGGIKILDIAAGAEHSVVVTGMVFRKDGAVKTWGWGEHGQLGLGDTCDHTNPQTVFLRHKLESADFDVKVYSGSGFTVAITTPHAAAKLTN 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9427663 9430404 + CmaCh18G011830.1 Cma18g01183 314521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01183 427 PANTHER OS01G0777800 PROTEIN 11 223 - -
Cma18g01183 427 Pfam Regulator of chromosome condensation (RCC1) repeat 10 60 IPR000408 -
Cma18g01183 427 Pfam Regulator of chromosome condensation (RCC1) repeat 115 164 IPR000408 -
Cma18g01183 427 Pfam Regulator of chromosome condensation (RCC1) repeat 172 220 IPR000408 -
Cma18g01183 427 Pfam Regulator of chromosome condensation (RCC1) repeat 363 416 IPR000408 -
Cma18g01183 427 Pfam Regulator of chromosome condensation (RCC1) repeat 64 111 IPR000408 -
Cma18g01183 427 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 364 419 IPR000408 -
Cma18g01183 427 Gene3D - 3 235 IPR009091 -
Cma18g01183 427 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 9 63 IPR000408 -
Cma18g01183 427 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 254 297 IPR000408 -
Cma18g01183 427 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 298 358 IPR000408 -
Cma18g01183 427 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 11 223 - -
Cma18g01183 427 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 339 409 - -
Cma18g01183 427 PRINTS Chromosome condensation regulator RCC1 signature 287 305 IPR000408 -
Cma18g01183 427 PRINTS Chromosome condensation regulator RCC1 signature 10 26 IPR000408 -
Cma18g01183 427 PRINTS Chromosome condensation regulator RCC1 signature 66 82 IPR000408 -
Cma18g01183 427 PRINTS Chromosome condensation regulator RCC1 signature 173 187 IPR000408 -
Cma18g01183 427 PRINTS Chromosome condensation regulator RCC1 signature 359 380 IPR000408 -
Cma18g01183 427 PRINTS Chromosome condensation regulator RCC1 signature 47 60 IPR000408 -
Cma18g01183 427 SUPERFAMILY RCC1/BLIP-II 9 314 IPR009091 -
Cma18g01183 427 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 171 223 IPR000408 -
Cma18g01183 427 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 154 164 IPR000408 -
Cma18g01183 427 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 64 115 IPR000408 -
Cma18g01183 427 PANTHER OS01G0777800 PROTEIN 339 409 - -
Cma18g01183 427 PANTHER OS01G0777800 PROTEIN 246 315 - -
Cma18g01183 427 Gene3D - 236 422 IPR009091 -
Cma18g01183 427 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 116 167 IPR000408 -
Cma18g01183 427 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 246 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01183 - - - cmax:111467367 753.821
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01183 Cma-Chr18:9427663 Cma07g01272 Cma-Chr7:7087477 6.95E-30 dispersed
Cma18g01183 Cma-Chr18:9427663 Cma20g00106 Cma-Chr20:477682 1.60E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g843 . . . . . . Bma14g01622 . . Cmo18g01205 . Cma18g01183 . Car18g01091 . Cpe09g00147 . Bhi07g01619 . . . . . . Cla05g02481 Cam05g2665 Cec05g2699 Cco05g2734 Clacu05g2667 Cmu05g2521 Cre05g2636 Cone13ag0985 . . . Lsi04g00471 Csa05g02408 Chy10g00969 Cme10g00457 . Blo11g00760 Bda07g01457 . Bpe11g01629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008999 1 4 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01183 Cma_Chr18 FPKM 3.9993 3.662337 3.016485 3.210203 5.681177 5.912059 6.713725 6.191411 6.435862 5.9347