Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01184 ATGCTCCTCTTCACCAACGCATTACCCACTTCTTATTTCTTCCCCACACCGTTCGGATGTTTGAGCCCTTGCGCTTTTCCCTCCTTTGTCTTTGTTTCGAGATGCGGCGGGAATTCGTATCATATGGCTGCGACAGAAAGGAGGTGTTCGCTTTTGTCTTCAAAGGGTATGTTTTATGGTTGTTCTGGGTTTGTAAGGAGGTGCAAAGGTTTGGATAGTGAAGGGAATTTTGCGTTGGAGGCAGAGATATTGGAGTTTATGGAAAGTTCAAGAAACCCAGAAGCGTTTCCGAGCAAGAAAGACTTGATTGAGGCCGGCAGGGAGGATTTAGTGGATGCTATTGTCAAGAAAGGTGGTTGGCTTTGTCTCGGATGGAATTTGAACGACGAAGAAGATGGGGGTATTGAACAGCTCTATCTCGAGGATCGGGAATCCATCTTGGCCACTCATTGGGATAGTTTTGGTGAATTCAATAGTTTCAAGAGTGATGAAAGACAAAGATTTGCTACAGATGTTTCTCCCATTGCTTCTTCTTCGACATCATCTTCCTTCACCAGCCGATCACAAGAAACTGTTGCTGAGCATGAGTCTGGGATTGAGGGTATGCTGAATCGATTGGAAAGAGAAAGAAATGCGACGTTCGGGACTGGTAAAAATGGTTTGCATTCTGAAACAACAGCAAAGGAGACAGTTGCTGACCTACAAGAAATCCCTATCAGCACGCCACTGAGTGCCAAAGAAGGCAAGTGGACCAATTTGGGGAGTTATCTTAGTAAGAATTCTTCTCCTGTACAAATTAATGGTCAAGGAGGCTCGGTTAGTTCTGAGGTGCAGAGAACTTGGAGCACATTCAAGACAGACCTTCAAGACGGAGATTTTAAAGGTTCCGAAATGGCTTTGAGCGAGGTAAGGAGCAGGGAAGTATTGGATGTTCTGAGATATGAAACATTAGGATCTAGAGGGGATCCTACCAATTCTAACTCTGGCGAGGAAGAAATGAGTCACAATCAAATACAACGTTACATTCAGAACTTGCAGTTGGAGCTCTCATCCGCAATCGGCTCATTGAGATCTAATGCATTTGCGTCTGAGAAGGGTCAAAGTAAACCTTCTGATGATTTGCTGGAGCTTTCGGATGCTTTTGAGTTTCAAGAAAATGAGATCCTAAATGCCAAGGACAAGCTACGGTCTATACGGGCAAAGATAGCCGTGGTGGAAGGAAAGATGGCACTGACAATTATTGATGCACAAAAGGTGGTAGAAGAGAAACAAAAGAGGATCAATTGTGCCCGCAGAGCTTTGCAATTTCTTCGCACTGCCTGCGTGGTCTGGCCTAATTCTGCAGCAGAGGTTCTCTTGGTAGGATCATTTGATGGTTGGTCAACCCAGAGGAAGATGGAAAGGTCCAGTACAGGCGTTTTCTCTTTGTTCCTGAAGCTGTATCCTGGAAAATACGAGATAAAATTCATTGTTGATGGCCAGTGGAAGATTGATCCGTTACGCCCAATTGTTAGCAGCGATGGATACGAGAACAATCTACTGATCGTCACGTAG 1554 44.72 MLLFTNALPTSYFFPTPFGCLSPCAFPSFVFVSRCGGNSYHMAATERRCSLLSSKGMFYGCSGFVRRCKGLDSEGNFALEAEILEFMESSRNPEAFPSKKDLIEAGREDLVDAIVKKGGWLCLGWNLNDEEDGGIEQLYLEDRESILATHWDSFGEFNSFKSDERQRFATDVSPIASSSTSSSFTSRSQETVAEHESGIEGMLNRLERERNATFGTGKNGLHSETTAKETVADLQEIPISTPLSAKEGKWTNLGSYLSKNSSPVQINGQGGSVSSEVQRTWSTFKTDLQDGDFKGSEMALSEVRSREVLDVLRYETLGSRGDPTNSNSGEEEMSHNQIQRYIQNLQLELSSAIGSLRSNAFASEKGQSKPSDDLLELSDAFEFQENEILNAKDKLRSIRAKIAVVEGKMALTIIDAQKVVEEKQKRINCARRALQFLRTACVVWPNSAAEVLLVGSFDGWSTQRKMERSSTGVFSLFLKLYPGKYEIKFIVDGQWKIDPLRPIVSSDGYENNLLIVT 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9430601 9434282 - CmaCh18G011840.1 Cma18g01184 314522

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01184 517 CDD E_set_AMPKbeta_like_N 442 516 - -
Cma18g01184 517 SUPERFAMILY E set domains 440 516 IPR014756 -
Cma18g01184 517 Gene3D Immunoglobulins 437 517 IPR013783 -
Cma18g01184 517 PANTHER PROTEIN PTST HOMOLOG 3, CHLOROPLASTIC 47 517 - -
Cma18g01184 517 Coils Coil 374 401 - -
Cma18g01184 517 PANTHER PROTEIN PTST HOMOLOG 2, CHLOROPLASTIC 47 517 - -
Cma18g01184 517 Coils Coil 413 440 - -
Cma18g01184 517 Pfam Glycogen recognition site of AMP-activated protein kinase 442 516 IPR032640 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01184 - - - cmax:111467545 996.882
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01625 Cma18g01184 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01209 Cma-Chr3:8039866 Cma18g01184 Cma-Chr18:9430601 7.37E-15 dispersed
Cma01g00364 Cma-Chr1:1807891 Cma18g01184 Cma-Chr18:9430601 1.12E-14 transposed
Cma18g01184 Cma-Chr18:9430601 Cma04g01625 Cma-Chr4:8195065 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g842 Blo01g00414 Blo16g01136 Bda01g02250 . Bpe13g00468 . . . Cmo04g01703 Cmo18g01206 . Cma18g01184 . Car18g01092 Sed06g1567 Cpe09g00146 Cpe01g01437 Bhi07g01622 Tan04g1129 Cmetu10g0993 Lac13g0272 Hepe10g1707 . . Cla05g02482 Cam05g2666 Cec05g2700 Cco05g2735 Clacu05g2668 Cmu05g2522 Cre05g2637 . . Cone6ag0616 Cone9ag0618 Lsi04g00474 Csa05g02407 Chy10g00968 Cme10g00458 . . . . . . Bma01g00079 Bma06g00657 . . . Cma04g01625 . Car04g01666 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005107 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01184 Cma_Chr18 FPKM 5.169994 5.107636 7.640805 7.23636 18.80234 18.217897 20.010641 11.367395 10.466084 9.880317