Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01193 ATGCCTTCTCCACCCTTCTCTGTTACTGTCTCCGCCGTCGTTCTGTTCCTCCTCCACCTATCTCCTCTGTTTTCCACCGCTGACCCTTCCAGCTCTCCATGTCCGCCGTTCTCTTCCGACCCCGTTTTCCCATTTTCATCTCTTTCCGGTCACGGCCATCCTTCTTTTCAGGTGCGCTGCTCTTCTCCTCACTCTGTTCTCACCATTAATGGGATTTCCTTTTCTCTTCTGAGCTTCAATACGACCTCCACTACCCTCCTTCTTTCCCCTCTTCCACGCAATGCCACTTCCACTGCCCATGGATCGAACCACCGCTGTTTATCTCGTTTTAGTTCTATTCCCAGCCGTTCGATTAATCTCTCTGGCTCCCCGTTCCGAATCTCAGATGGGTATTGTTCTCGACTCTCTCTTCTCATCCCCTGTTCGCCGCCGCATCTTCCCAACTGCAGTCATTGTCCGTGGGAGTGTAGTCTTATCAAGAAGCCACTTAATTTGCTCCATGGATGTGGCGTCCAGCATCAGTCGTTCTTGGAGCAAGGTTGTCAAGGCGAGGTGTTGGAGTATTTAGACAGGATTCTTAGATTGGGGCTTGAAATCGAGTGGGATACAGATCAAGATCCTTTCTTTATTAAGTGTACTGATTGTAAAGCTAAAAATGGTGTTTGCGGCTTCAATTCATCAGACCCAGATAGGCATTTCATTTGCTATCATGCTCAAACTCGATATACATATCCTAATAGAATCGCGATTTTCTCCTCTGTTTTTGCGTTGATGTGCTTGTTACTGGTTGTCGCCGTCACGATGGCTTTTTTCCGGTCGAGATGGTTGAGATCTCTCGCCATTGAAGTAGACCCGACAACCCAGTTCCTCAGTCGTCATCGTTCACCTAATCTTCTCCCGCCGGTTTTCCCCTACGAAGAATTAGAATCCTCGACGAATCGATTCGACCCGAAGAGGAAACTGGGCGACGGCGGATTTGGGTCTGTGTATTTGGGTCAGCTCAACGATGGACGATTAGTGGCGGTGAAGTATCTTCACAAGCACCACGCCGCCGCTCCTTCCGGCAGGGCGTTCTTCACCAAGTCGTTCTGTAACGAAATCTTGATTCTTTCTTCAATTAATCACCCGAATCTCGTTAGATTACATGGGTATTGTAGCGACCCGAGAGGGCTTATTCTTGTTTATGATTATGTACCAAATGGGACGCTTGCCGACCATCTCCATGGTTGTAATAGCTTGTACCGGAAGGGATCTCTGTCATGGCAAGTAAGGATTGATATTGCTCTGCAAATCGCCATGGCTATGGAGTATTTGCATTTCTCTGTGGTGCCGCCGATTGTTCACAGAGACATTACCTCTTCGAACATTTTTATGGAGAAAGATATGAGAATCAAAGTTGGGGATTTTGGGCTTTCGAGGCTGTTGGTTTTTTCAGACACGACGTCGGCTTCATCTGGGTATGTCTGCACCGGACCTCAGGGGACACCCGGTTACTTGGATCCGGATTATCACCGGTCGTTCCGGTTGACGGAGAAGAGTGACGTGTACAGCTTTGGAGTGGTTTTGTTGGAGCTGATTTCTGGTTTAAAAGCGGTGGATCAGAGTCGAGAGAGGAGAGAAATGACGTTGGCGGATCTGGTAGTGTCGAAGATCCAAATGGGTCAGCTTCATCAGGTGGTGGACTCTGTTTTGGGTATCGACGGCGAGGTAATCAACGGCGTTGAGGCAATGGCAGAGCTGGCTTTCCAGTGTGTGGCGGCGGACAAGGACGACCGCCCCAACGCCAAGGAGATCGTGGAGGAGCTCCGGCGGATTCGTAACTGCTGCGGTCGTGGAGCTGACTTACCGGCGGGGTTCGCAAGTCTACCGGACTCAGCGTCGGCGGTTTTACAGAGAAGGCGGACGGAGATTCCGATGGGTAATACGTATTGTGTTTTGTTCGGCTGCGTGGAGCAAGCGAGTGTGGGGGTGGTTGAGAGATGGGGAAGGTTTGAAAAATTGGCTCAGCCTGGGCTCCATTTCTTCAACCCTTTTGCAGGCCAGTGCCTTGCCGGATTCCTCTCCACTAGGATTTCCTCCCTTGATGTTCGTATTGAGACCAAGACCAAGGATAATGTCTTTGTGCAATTGCTGTGTTCAATTCAGTACCGGGTCATCAAAGAAAATGCTCATGATGCATTTTATGAGTTGCAAAATCCCCAAGAACAGATTCAGGCCTACGTGTTTGATGTGGTTCGTGCCGTTGTCCCTAGAATGAATTTGGATGAACTCTTTGAACAAAAGGGTGAAGTTGCTAAAGCTGTATCGGAGGAACTTGAGAAGGTGATGGGAGACTATGGATATAGTATAGAGCACATTTTAATGGTCGATATAATACCAGATGCTTCGGTGCGCAGCGCAATGAATGAGATTAATGCAGCTTCTAGTACTTCATTTTCTTCTACAGCTCAAAGGCTTCAACTTGCTAGTGTATACAAAGGCGAAGCGGAGAAGGTGCTCCTAGTAAAAAAGGCAGAAGCTGAAGCTGAAGCGAAATACCTTGGCGGGGTCGGTGTGGCGAGGCAGAGACAGGCAATCACAGATGGTCTGAGAGAGAATATCTTGAACTTCTCCCATAGGGTGGAAGGTACCTCAGCTAAAGAGGTAATGGATCTGATCTTGATTACTCAATATTTTGACACCATCAAGGACCTTGGAAATTCATCCAAGAACACAACTGTGTTCATTCCTCATGGTCCGGGCCATGTTAGAGATGTAAGCGACCAAATACGCAGCGGGATGATGGAGGCTGCGAGCGCACAGGCAGGGCTTACTAATGATGAGATTTTATTATTCCCGATCGACAAAATGTTCTTTAGTCGTAGTATCGGATTTCTTCATCATGCCCTATGCTGTGACAAGGTGGGCATTGAAGTGAAACCAGGCAAACCGTACCCTTACCATTCTGATAATGTGCCGGGAAAGCTCCGGGTAACTCAGGCAACTTTGGGCTCTGGCTCATCGAAAGAGAAAAGCATCATTCAGTGTTCTGTTGGGCATAGGAGTCCAATTTTTTTGTGCTCTTTGATACCGAATAAGATTGAATCATGCCCCTTGAATCTTGAATTTGAGGAAGATGATTTGGTAGCCTTCTCAGTTATCGGCCCACAAAGCATCCATCTTTCTGGTTATTTTGTAGCTGATGAGGGAAATTTCATCAGGGATGACTATGAGTCTGATTCTTTTGGGGAGGACATTGCTGAAACGGATACAGAGGATTCATCAGAATGTGACACTGGGGATGAATATGATGATGAATTCATTGATGATGAGGACGATGAATATCCTGGAATATTCTCTAATTCGTCAGTTCCCAAAAGTGGAGTTGTAATTGAGGAGATAGTGGATGATGAAAAATCAAATGATGCCAATGGTCGAGCCAAGAAAGTGAAGAAAAACAAGTCTAGTGACTCTGAAGACAATAGGAACTCACAGCGTCAGATTGTATTGAAAAGAAATGTGCAAAAAGCAGTTCCAGAAAGTGAAGATGAAGATGGATTTCCAATTCCTACTAAAAGCAAGAGCAAAGTAAATATTCAGAAATTAGAATCTGAGCAAGAACAAAAAAACCCAAGTACTGGGAATGTGAAGGAGGCAAAAGCAAAAGATGGCAACGATGCTTCTAGCATAAAAAGAAAAGTCGAAAATGATGAGCAAGTTAATCTTTTGGAAAGCAAAAAGAAAAAGAAGCAAAAGAAGAAGGTAAAAGAAGAAAAGGCTGGGGAAGAGCCACCAAAAGAAGTGAAGAGTGAAGGTGTCAATCAGATTTCTGATGGAGATAAGAATGATAAAAAGCTATCTAAACAGAGGGATGCCTCGACTCACATGGACGTTGTTGATGGTGAAAACCATTCGGAAGATAAACAAAAAAAGAAGAAAAAAGAGAAGAAAACAAAGGAGGAGAAGAACAAGGAGACTGAAGTCGGATCAAAATCCGAAGAACTAACTAAAACGGTGGGAGATCATCGTAAATCAACTCTCGGGTCAAAAGAGAAGGGAAGTGAATCCAAGTCATCTCAAGTGAGAACCTTTGCTAATGGATTGGTTATTGAGGAGATAGCCATGGGTAAACCAGATGGTAAAAGAGCTTCACCCGGAAACCAGGTTAGTGTTCACTACATTGGCAAGCTAAAGAACGGCAAAATATTTGACAGTAACGTCGGTAGAGCACCGTTCAAATTCCGTTTAGGTTTGGGACAGGTCATAAAGGGATGGGATATCGGGGTTAATGTTATGGAGCTGCAGGTGCGGGTGGGAAGATTCCGCCGAACTCATGGCTTATTTTTGATGTGGAATTGGTTGCTGTCCGCTGAATTCAACGCCCTTCCCATTGCCTGA 4377 45.94 MPSPPFSVTVSAVVLFLLHLSPLFSTADPSSSPCPPFSSDPVFPFSSLSGHGHPSFQVRCSSPHSVLTINGISFSLLSFNTTSTTLLLSPLPRNATSTAHGSNHRCLSRFSSIPSRSINLSGSPFRISDGYCSRLSLLIPCSPPHLPNCSHCPWECSLIKKPLNLLHGCGVQHQSFLEQGCQGEVLEYLDRILRLGLEIEWDTDQDPFFIKCTDCKAKNGVCGFNSSDPDRHFICYHAQTRYTYPNRIAIFSSVFALMCLLLVVAVTMAFFRSRWLRSLAIEVDPTTQFLSRHRSPNLLPPVFPYEELESSTNRFDPKRKLGDGGFGSVYLGQLNDGRLVAVKYLHKHHAAAPSGRAFFTKSFCNEILILSSINHPNLVRLHGYCSDPRGLILVYDYVPNGTLADHLHGCNSLYRKGSLSWQVRIDIALQIAMAMEYLHFSVVPPIVHRDITSSNIFMEKDMRIKVGDFGLSRLLVFSDTTSASSGYVCTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGLKAVDQSRERREMTLADLVVSKIQMGQLHQVVDSVLGIDGEVINGVEAMAELAFQCVAADKDDRPNAKEIVEELRRIRNCCGRGADLPAGFASLPDSASAVLQRRRTEIPMGNTYCVLFGCVEQASVGVVERWGRFEKLAQPGLHFFNPFAGQCLAGFLSTRISSLDVRIETKTKDNVFVQLLCSIQYRVIKENAHDAFYELQNPQEQIQAYVFDVVRAVVPRMNLDELFEQKGEVAKAVSEELEKVMGDYGYSIEHILMVDIIPDASVRSAMNEINAASSTSFSSTAQRLQLASVYKGEAEKVLLVKKAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHRVEGTSAKEVMDLILITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDVSDQIRSGMMEAASAQAGLTNDEILLFPIDKMFFSRSIGFLHHALCCDKVGIEVKPGKPYPYHSDNVPGKLRVTQATLGSGSSKEKSIIQCSVGHRSPIFLCSLIPNKIESCPLNLEFEEDDLVAFSVIGPQSIHLSGYFVADEGNFIRDDYESDSFGEDIAETDTEDSSECDTGDEYDDEFIDDEDDEYPGIFSNSSVPKSGVVIEEIVDDEKSNDANGRAKKVKKNKSSDSEDNRNSQRQIVLKRNVQKAVPESEDEDGFPIPTKSKSKVNIQKLESEQEQKNPSTGNVKEAKAKDGNDASSIKRKVENDEQVNLLESKKKKKQKKKVKEEKAGEEPPKEVKSEGVNQISDGDKNDKKLSKQRDASTHMDVVDGENHSEDKQKKKKKEKKTKEEKNKETEVGSKSEELTKTVGDHRKSTLGSKEKGSESKSSQVRTFANGLVIEEIAMGKPDGKRASPGNQVSVHYIGKLKNGKIFDSNVGRAPFKFRLGLGQVIKGWDIGVNVMELQVRVGRFRRTHGLFLMWNWLLSAEFNALPIA 1458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9461541 9475133 + CmaCh18G011930.1 Cma18g01193 314531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01193 1458 Pfam Nucleoplasmin-like domain 969 1059 IPR041232 -
Cma18g01193 1458 MobiDBLite consensus disorder prediction 1169 1183 - -
Cma18g01193 1458 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 613 IPR045274 GO:0007166
Cma18g01193 1458 MobiDBLite consensus disorder prediction 1311 1350 - -
Cma18g01193 1458 Gene3D Band 7 domain 682 807 IPR036013 -
Cma18g01193 1458 MobiDBLite consensus disorder prediction 1129 1159 - -
Cma18g01193 1458 SMART PHB_4 645 805 IPR001107 -
Cma18g01193 1458 CDD SPFH_like_u4 649 927 - -
Cma18g01193 1458 Coils Coil 1298 1318 - -
Cma18g01193 1458 Gene3D Nucleoplasmin core domain 966 1064 - -
Cma18g01193 1458 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Cma18g01193 1458 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 1374 1427 IPR001179 GO:0003755
Cma18g01193 1458 MobiDBLite consensus disorder prediction 1248 1302 - -
Cma18g01193 1458 Gene3D Phosphorylase Kinase; domain 1 291 397 - -
Cma18g01193 1458 MobiDBLite consensus disorder prediction 1129 1354 - -
Cma18g01193 1458 CDD STKc_IRAK 321 605 - -
Cma18g01193 1458 Gene3D Transferase(Phosphotransferase) domain 1 398 611 - -
Cma18g01193 1458 ProSitePatterns Tyrosine protein kinases specific active-site signature. 446 458 IPR008266 GO:0004672|GO:0006468
Cma18g01193 1458 Gene3D - 1340 1433 IPR046357 GO:0003755
Cma18g01193 1458 Pfam Protein kinase domain 317 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g01193 1458 SUPERFAMILY Protein kinase-like (PK-like) 295 602 IPR011009 -
Cma18g01193 1458 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.5 24 613 - -
Cma18g01193 1458 Coils Coil 1233 1253 - -
Cma18g01193 1458 SUPERFAMILY Band 7/SPFH domain 685 807 IPR036013 -
Cma18g01193 1458 Pfam SPFH domain / Band 7 family 650 811 IPR001107 -
Cma18g01193 1458 MobiDBLite consensus disorder prediction 1212 1238 - -
Cma18g01193 1458 SUPERFAMILY FKBP-like 1339 1425 - -
Cma18g01193 1458 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 1379 1426 IPR001179 GO:0003755
Cma18g01193 1458 ProSiteProfiles Protein kinase domain profile. 315 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01617 Cma18g01193 CCT
Cma16g00179 Cma18g01193 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01193 Cma-Chr18:9461541 Cma15g00054 Cma-Chr15:282771 7.30E-84 dispersed
Cma18g01349 Cma-Chr18:10237917 Cma18g01193 Cma-Chr18:9461541 4.08E-06 dispersed
Cma11g00163 Cma-Chr11:841315 Cma18g01193 Cma-Chr18:9461541 4.31E-102 transposed
Cma16g00180 Cma-Chr16:788973 Cma18g01193 Cma-Chr18:9461541 0 transposed
Cma16g00179 Cma-Chr16:782370 Cma18g01193 Cma-Chr18:9461541 0 wgd
Cma18g01193 Cma-Chr18:9461541 Cma04g01617 Cma-Chr4:8165758 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69317 PF00069 Pkinase 1.40E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01193 - - csv:101206111 1028.08