Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01194 ATGGAGGAGGAGAAAGAAGCCGGAGTTTCTAGGTTTACAGTTACCAACAATGAAGCCCTAGACACCTTCCAGTTAGCTCCCAGAACAGAAACCCTAAAACCCACCAATGAGCCAAAAGTAACGGCTACGACCGCACCGGCGAGTATCCCAACCACTGCACCACCACCGGGATTCACGGCGGTTTCCACTACAGATACAAAGAAGAAGAGAGGTCGGCCGAGAAAGTACGAGGCGGATGGGAAGCGGTCACTGACATTAGCGTTGTCTCCGATGCCGATATCGTCGTCAATTCCACTGACCGGCGAGTTCCCGAACTGGAAACGAGACAACGACATGTCTCTAGCGATAATCAAGAAGCCACAGAGATTTGAGTTTGAGAATCCGGGTCAGAAACTTGCATACTCTGTTGGTGCTAATTTTACTCCCCATGTTATCACTGTCAATGCTGGAGAGGACATTACTATGAAGATCATGTCTCTCTCTCAGCAAGAATCCCGAGCTATTTGCATTCTTTCTGCAAATGGCACAATTTCAAATGTCACACTTCGACAGGCCACTTCTTCCGGAGGTACCTTAACGTACGAGGGTTGTTTTGAAATACTCGCATTGACTGGATCGTTTATGCCGACACAGAATGGAGCTACAAAGAGTAGATGTGGTGGGATGAGTGTTTCCCTAGCGGGTCAAGATGGACAAGTCGTCGGCGGTGGACTTGCTGGTTTGTTGGTAGCTGCTGGTCCTGTGCAAGTTGTGGTAGGTAGTTTCCTTCCGGGTCACCAGCAAGAACAGAAGCCAAAGAAGCCTAGAAATGAGCCCACAACCATTTTCTTTCCACCCATCAATACCATCAGTGGTGAAGAAATGAAGGCGGCATACACCGGTGGTATCAAGCCTATTGTCACGACACCGTCCAATCAAGAACATAAGCCACCATCGCCAAGCGCAGTGACACCCTTCAAAATCTCCTCCACTGACAACTTACCTCTATCAGAACAAGAACCCAAAACTCAAAGTCAATCAAACTGTGAGGTTTCTTGTTGA 1041 48.22 MEEEKEAGVSRFTVTNNEALDTFQLAPRTETLKPTNEPKVTATTAPASIPTTAPPPGFTAVSTTDTKKKRGRPRKYEADGKRSLTLALSPMPISSSIPLTGEFPNWKRDNDMSLAIIKKPQRFEFENPGQKLAYSVGANFTPHVITVNAGEDITMKIMSLSQQESRAICILSANGTISNVTLRQATSSGGTLTYEGCFEILALTGSFMPTQNGATKSRCGGMSVSLAGQDGQVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEQKPKKPRNEPTTIFFPPINTISGEEMKAAYTGGIKPIVTTPSNQEHKPPSPSAVTPFKISSTDNLPLSEQEPKTQSQSNCEVSC 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9477137 9481302 - CmaCh18G011940.1 Cma18g01194 314532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01194 346 MobiDBLite consensus disorder prediction 28 75 - -
Cma18g01194 346 MobiDBLite consensus disorder prediction 297 346 - -
Cma18g01194 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 142 255 IPR005175 -
Cma18g01194 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 8 325 - -
Cma18g01194 346 CDD DUF296 141 255 IPR005175 -
Cma18g01194 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 325 IPR039605 GO:0003680
Cma18g01194 346 MobiDBLite consensus disorder prediction 259 279 - -
Cma18g01194 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 139 261 - -
Cma18g01194 346 MobiDBLite consensus disorder prediction 28 48 - -
Cma18g01194 346 MobiDBLite consensus disorder prediction 298 346 - -
Cma18g01194 346 Gene3D - 142 270 - -
Cma18g01194 346 ProSiteProfiles PPC domain profile profile. 137 281 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma15g01381 Cma18g01194 CCT
Cma02g01007 Cma18g01194 CCT
Cma15g01381 Cma18g01194 ECH
Cma02g01007 Cma18g01194 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01173 Cma-Chr15:7425014 Cma18g01194 Cma-Chr18:9477137 3.27E-86 dispersed
Cma15g01381 Cma-Chr15:8645120 Cma18g01194 Cma-Chr18:9477137 7.04E-101 dispersed
Cma16g01035 Cma-Chr16:7958211 Cma18g01194 Cma-Chr18:9477137 1.12E-76 dispersed
Cma18g01194 Cma-Chr18:9477137 Cma01g02039 Cma-Chr1:12986204 6.26E-55 dispersed
Cma18g01194 Cma-Chr18:9477137 Cma02g01007 Cma-Chr2:5983347 5.18E-101 wgd
Cma18g01194 Cma-Chr18:9477137 Cma02g01510 Cma-Chr2:8610196 1.19E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01194 - - csv:101217222 535.413