Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma18g01197 | ATGGCGAGAAGAGGAGGAGCAATTGGATCATGGCTTTGCATCGTTCTGGTTTTAATTTCTGCGCAAATTCATGTCTCACCCAGATCGGATAAGGAAATTAGGGAAAGATTTTATGGAAACTTGATCAACTCAACGGCACCGATTTCCGGTGACGGTAGTATTGCCCAAATGTTCGATAAGGTGCTCGAGAAGGAGTTCCCTGACAATGATCTGCCTGAAGGTTCGAGCGGAAGCAGCTTTAATAACAGTGTCGCTGATCAGGAGGCAGAACTGGAGACAGTAGCCAAAATCACTCATGAGAAGGGCAAGAAAAATGATAGTCAAAAGGCAAAGTATGGAACCAAAACAGTTGCTTTTGTTCTTATTTCTGAATTGTTCTATTATATACATGGGACTAGAGCATTCCAATTTCAGGATGTTTTCTCTCTGGAAAATGAAGAATCTGATGATGTTATGACGTTGATTGATAAAAAAGACAATGTATTTGTGATGTCAAACAAGAAATCAAAGTATCCAGTACTTCAAGTAGATTTGAGACTGATTTCAGACTTGGTTGTGGTTATTGTTTCTGCCGCAATTGGAGGAATTATCTTTTCTTGTTTAGGCCAACCGGTTATTGTGGGCTATCTTCTTGCGGGGTCAATTATTGGACCAGGAGGTCTAAAATTCATCAGTGAAATGGTGCAGGTTGAGACAGTGGCACAATTTGGTGTTGTATTTCTTCTTTTTGCTTTAGGACTGGAGTTTTCTTTGACAAAGTTAAAAGTTGTGGGGGCTGTTGCTGTTTTTGGAGGTTTTCTACAGATCATCATATTTATGTTCTTATGTGGCATAATTGCCATGTTAAGTGGAGCTAAATTGTCCGAGGGTGTATTTGTCGGTTCATTTCTATCAATGTCATCTACAGCAGTGGTGGTGAAGTTCTTGGTAGAACGGAATAGCAGTAATACTCTTCATGGTCAGGTTACTATTGGAACACTTATCTTACAGGACTGTGCCGTTGGTTTGTTATTTGCCTTGCTCCCAGTTTTGGGTGGTCACAATGGTCTTATTTTAGGAATGATATCTATGGGAAAGTTGCTACTGGTATTGTCAGTATATCTCACAGTCGCGTCCATTTTGTCGTGGTCATTTGTTCCCCGCTTTCTTAAGTTGATGATGCAGCTGTCGTCTCAAACAAATGAGTTGTACCAGCTTGCTGCTGTGGCATTTTGTTTGCTGTCTGCCTGGTGCAGTGATAAGTTGGGACTCAGTCTTGAGTTGGGTTCCTTTGTAGCTGGAGTTATGATATCTACCACCGACTTTGGTCAACATACTTTAGATCAGGTGGAACCAATTCGCAATTTATTTGCAGCTTTGTTCCTTTCGAGTATTGGAATGCTCATTCATGTACATTTTCTGTGGAGCCATTTGGATATTTTGCTAGCATCTGTCATGCTGGTTGTGTTTGTGAAGACAGCAGTTGTTACCGTTGTTGCAAAGGCATTTGGATACAGTATAAGGACTTCTTTTCAGGTTGGAGTCATGCTTGCTCAAATTGGAGAGTTTGCTTTTGTTCTCCTAAGCCGTGCCTCAAATCTTCATCTCATTGGGGGGAAAGTTTATCTGCTACTTCTTGGAACAACAGCACTTAGTCTAGTGACCACCCCTCTTGTGTTCAAATTGGTACCTGCTGTGCTGAATTTAGGGGTTCTCATGCATTGGTTCCCCTCTGAAAACATCATTCAAAGCGAGCCAACCTTAAGCTCATCTGCCAAACCCAAACCAACCAAATTGAAAACTCCATCACTTCCTCACTTCTCCTCCGCTGCCGGGCGTCCACCTGCGTCTCCGCGCGGCGGAGTCACCGTCATGAGGCTTGTGGTGCCTCTGCAAGGCGTTGTCCAAGGCCGTGGAGGTCTCTTGTTGGGCTCTCTCATTCCCTGTGCTCTCTTCTACTTCCTCCAACTTTATCTCAAGCGAAATCGTTCTCCCAACTCTGACTCCTCCTCGAATTCTCCGTCCCATTCTCACTCTTCCTCTAACCTCGTCGACCTCAACCGCTCGTCCTCTCGCTCTAATCTACTAACGCGCGGATCCGTTGGTCGAGTTCGGCTTTCTTCTCGAGCCAGTTCGATTGCGAAGCCCAATAACTCCCCCTACTATATTGGATTGGATCGCGTTCGGGAGGATCCTTACGATAGGTTGGATAATCCGAATGGGATTATTCAGCTTGGGTTGTCCGAGAATAGGTTGTGCTTTGATTTGCTTGAGAAATGGATATCGGAGAATTATACTGGTTCCGTTGGTGGAGGCAATAGCGTCGAGTTGAATATTATGGGGATGACTACTTACCAGCCTTTCGATGGATTGTGGGAGCTGAAAATGGCTATGGCAGGTTTCATGTCTCAGGTAATGGGTGGTGGAGTGGCTTTTGATCCATCACAATTATTGTTAACATCTGGTGCCACTGCCGCGGTCGAGGTACTCTGTTTCTGCTTAGCAGACCCTGGAAATGCATTTCTTATTCCAACTCCTTATTATCCTGGTTTTGATAGAGATGTGAAGTGGAGAACTGGAGTGGATTTAATACCAGTTCACTGTCGTAGTGCTGACAACTTTAACTTGAACATCACTGTACTAGAGCAAGCATACAATCAAGCAAGGAAGCGAGGAATAAAAGTTCGGGGAGTTCTTTTATCTAACCCTGCAAATCCAGTTGGCAACATGTTGCCCCGAGAAATGCTGTACAGTATTTTAGATTTTGCCCAAGAGAAGAATATCCATGTTGTATCTGATGAGATATTTGCAGGGTCAGTTTATGGAAACGACGAGTTTGTGAGCATGGCTGAAATGATTGATTCAGAAGATATTGACAAGAATAGAGTTCATATAGTGTATGGACTGTCGAAAGACCTCTCTCTTCCTGGCCTTAGAGTTGGTGTCATCTATTCACAAAATGAAAATGTTTTGGCTGCTGCTAGAAAAATGGCAAGATTTTGCCCGATTTCCGCACCAACCCAGCAGCTTGTTACCTTGATGCTTTTGGACAGAACCTTCGTTAATGAATACCTGGAGACGAGCAAAAAGAGGATTCGCGAGATGCATGTTCTTTTCGTGGCTGGTTTGAAACAGTTGGGAATCAAGTGTGCAAAGAGCAGTGCTGGTTTTTACTGCTGGGCTGATATGAGTGGACTGATGAATTCTTATAGTGAGAAAGGGGAGCTAGAATTATGGGAGAAGCTGCTGAATGTAGCTAAAATTAACGCGACTCCTGGATCTGCTTGTCATTGCATAGAACCTGGATGGTTTAGATGTTGTTTCACTACACTTTCACGAGAGGATTTATTGATCGTTATAGAAAGGATTAGAAAAATGGCCGTTACGTGCAAATCTCCCAGTTGA | 3384 | 43.38 | MARRGGAIGSWLCIVLVLISAQIHVSPRSDKEIRERFYGNLINSTAPISGDGSIAQMFDKVLEKEFPDNDLPEGSSGSSFNNSVADQEAELETVAKITHEKGKKNDSQKAKYGTKTVAFVLISELFYYIHGTRAFQFQDVFSLENEESDDVMTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEMVQVETVAQFGVVFLLFALGLEFSLTKLKVVGAVAVFGGFLQIIIFMFLCGIIAMLSGAKLSEGVFVGSFLSMSSTAVVVKFLVERNSSNTLHGQVTIGTLILQDCAVGLLFALLPVLGGHNGLILGMISMGKLLLVLSVYLTVASILSWSFVPRFLKLMMQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFVAGVMISTTDFGQHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWSHLDILLASVMLVVFVKTAVVTVVAKAFGYSIRTSFQVGVMLAQIGEFAFVLLSRASNLHLIGGKVYLLLLGTTALSLVTTPLVFKLVPAVLNLGVLMHWFPSENIIQSEPTLSSSAKPKPTKLKTPSLPHFSSAAGRPPASPRGGVTVMRLVVPLQGVVQGRGGLLLGSLIPCALFYFLQLYLKRNRSPNSDSSSNSPSHSHSSSNLVDLNRSSSRSNLLTRGSVGRVRLSSRASSIAKPNNSPYYIGLDRVREDPYDRLDNPNGIIQLGLSENRLCFDLLEKWISENYTGSVGGGNSVELNIMGMTTYQPFDGLWELKMAMAGFMSQVMGGGVAFDPSQLLLTSGATAAVEVLCFCLADPGNAFLIPTPYYPGFDRDVKWRTGVDLIPVHCRSADNFNLNITVLEQAYNQARKRGIKVRGVLLSNPANPVGNMLPREMLYSILDFAQEKNIHVVSDEIFAGSVYGNDEFVSMAEMIDSEDIDKNRVHIVYGLSKDLSLPGLRVGVIYSQNENVLAAARKMARFCPISAPTQQLVTLMLLDRTFVNEYLETSKKRIREMHVLFVAGLKQLGIKCAKSSAGFYCWADMSGLMNSYSEKGELELWEKLLNVAKINATPGSACHCIEPGWFRCCFTTLSREDLLIVIERIRKMAVTCKSPS | 1127 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 9499886 | 9510707 | - | CmaCh18G011970.1 | Cma18g01197 | 314535 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma18g01197 | 1127 | Pfam | Aminotransferase class I and II | 736 | 1116 | IPR004839 | GO:0009058|GO:0030170 | |
Cma18g01197 | 1127 | ProSitePatterns | Aminotransferases class-I pyridoxal-phosphate attachment site. | 961 | 974 | IPR004838 | GO:0003824|GO:0009058|GO:0030170 | |
Cma18g01197 | 1127 | Gene3D | - | 178 | 561 | IPR038770 | - | |
Cma18g01197 | 1127 | Gene3D | - | 758 | 1010 | IPR015421 | GO:0003824 | |
Cma18g01197 | 1127 | MobiDBLite | consensus disorder prediction | 580 | 611 | - | - | |
Cma18g01197 | 1127 | PANTHER | BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED | 610 | 1122 | - | - | |
Cma18g01197 | 1127 | Gene3D | Aspartate Aminotransferase, domain 1 | 724 | 1115 | IPR015422 | GO:0003824 | |
Cma18g01197 | 1127 | Pfam | Sodium/hydrogen exchanger family | 185 | 554 | IPR006153 | GO:0006812|GO:0015299|GO:0016021|GO:0055085 | |
Cma18g01197 | 1127 | SUPERFAMILY | PLP-dependent transferases | 712 | 1119 | IPR015424 | - | |
Cma18g01197 | 1127 | Coils | Coil | 864 | 884 | - | - | |
Cma18g01197 | 1127 | MobiDBLite | consensus disorder prediction | 658 | 682 | - | - | |
Cma18g01197 | 1127 | PRINTS | 1-aminocyclopropane-1-carboxylate synthase signature | 831 | 852 | - | - | |
Cma18g01197 | 1127 | PRINTS | 1-aminocyclopropane-1-carboxylate synthase signature | 955 | 979 | - | - | |
Cma18g01197 | 1127 | PRINTS | 1-aminocyclopropane-1-carboxylate synthase signature | 772 | 788 | - | - | |
Cma18g01197 | 1127 | PRINTS | 1-aminocyclopropane-1-carboxylate synthase signature | 738 | 764 | - | - | |
Cma18g01197 | 1127 | PRINTS | 1-aminocyclopropane-1-carboxylate synthase signature | 987 | 1010 | - | - | |
Cma18g01197 | 1127 | PRINTS | 1-aminocyclopropane-1-carboxylate synthase signature | 885 | 909 | - | - | |
Cma18g01197 | 1127 | PRINTS | 1-aminocyclopropane-1-carboxylate synthase signature | 809 | 829 | - | - | |
Cma18g01197 | 1127 | PRINTS | 1-aminocyclopropane-1-carboxylate synthase signature | 921 | 944 | - | - | |
Cma18g01197 | 1127 | PANTHER | AMINOTRANSFERASE ACS12-RELATED | 610 | 1122 | - | - | |
Cma18g01197 | 1127 | CDD | AAT_like | 774 | 1118 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma15g01179 | Cma18g01197 | CCT | |
Cma15g01179 | Cma18g01197 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01517 | Cma-Chr2:8650601 | Cma18g01197 | Cma-Chr18:9499886 | 0 | dispersed | |
Cma10g00712 | Cma-Chr10:3201645 | Cma18g01197 | Cma-Chr18:9499886 | 0 | dispersed | |
Cma12g00636 | Cma-Chr12:3375519 | Cma18g01197 | Cma-Chr18:9499886 | 0 | dispersed | |
Cma15g01179 | Cma-Chr15:7462460 | Cma18g01197 | Cma-Chr18:9499886 | 0 | dispersed | |
Cma18g01197 | Cma-Chr18:9499886 | Cma10g00702 | Cma-Chr10:3155561 | 1.00E-137 | dispersed | |
Cma19g00500 | Cma-Chr19:5897011 | Cma18g01197 | Cma-Chr18:9499886 | 2.11E-29 | dispersed | |
Cma18g01197 | Cma-Chr18:9499886 | Cma05g00096 | Cma-Chr5:411737 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma18g01197 | - | - | csv:101207607 | 962.214 |