Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01197 ATGGCGAGAAGAGGAGGAGCAATTGGATCATGGCTTTGCATCGTTCTGGTTTTAATTTCTGCGCAAATTCATGTCTCACCCAGATCGGATAAGGAAATTAGGGAAAGATTTTATGGAAACTTGATCAACTCAACGGCACCGATTTCCGGTGACGGTAGTATTGCCCAAATGTTCGATAAGGTGCTCGAGAAGGAGTTCCCTGACAATGATCTGCCTGAAGGTTCGAGCGGAAGCAGCTTTAATAACAGTGTCGCTGATCAGGAGGCAGAACTGGAGACAGTAGCCAAAATCACTCATGAGAAGGGCAAGAAAAATGATAGTCAAAAGGCAAAGTATGGAACCAAAACAGTTGCTTTTGTTCTTATTTCTGAATTGTTCTATTATATACATGGGACTAGAGCATTCCAATTTCAGGATGTTTTCTCTCTGGAAAATGAAGAATCTGATGATGTTATGACGTTGATTGATAAAAAAGACAATGTATTTGTGATGTCAAACAAGAAATCAAAGTATCCAGTACTTCAAGTAGATTTGAGACTGATTTCAGACTTGGTTGTGGTTATTGTTTCTGCCGCAATTGGAGGAATTATCTTTTCTTGTTTAGGCCAACCGGTTATTGTGGGCTATCTTCTTGCGGGGTCAATTATTGGACCAGGAGGTCTAAAATTCATCAGTGAAATGGTGCAGGTTGAGACAGTGGCACAATTTGGTGTTGTATTTCTTCTTTTTGCTTTAGGACTGGAGTTTTCTTTGACAAAGTTAAAAGTTGTGGGGGCTGTTGCTGTTTTTGGAGGTTTTCTACAGATCATCATATTTATGTTCTTATGTGGCATAATTGCCATGTTAAGTGGAGCTAAATTGTCCGAGGGTGTATTTGTCGGTTCATTTCTATCAATGTCATCTACAGCAGTGGTGGTGAAGTTCTTGGTAGAACGGAATAGCAGTAATACTCTTCATGGTCAGGTTACTATTGGAACACTTATCTTACAGGACTGTGCCGTTGGTTTGTTATTTGCCTTGCTCCCAGTTTTGGGTGGTCACAATGGTCTTATTTTAGGAATGATATCTATGGGAAAGTTGCTACTGGTATTGTCAGTATATCTCACAGTCGCGTCCATTTTGTCGTGGTCATTTGTTCCCCGCTTTCTTAAGTTGATGATGCAGCTGTCGTCTCAAACAAATGAGTTGTACCAGCTTGCTGCTGTGGCATTTTGTTTGCTGTCTGCCTGGTGCAGTGATAAGTTGGGACTCAGTCTTGAGTTGGGTTCCTTTGTAGCTGGAGTTATGATATCTACCACCGACTTTGGTCAACATACTTTAGATCAGGTGGAACCAATTCGCAATTTATTTGCAGCTTTGTTCCTTTCGAGTATTGGAATGCTCATTCATGTACATTTTCTGTGGAGCCATTTGGATATTTTGCTAGCATCTGTCATGCTGGTTGTGTTTGTGAAGACAGCAGTTGTTACCGTTGTTGCAAAGGCATTTGGATACAGTATAAGGACTTCTTTTCAGGTTGGAGTCATGCTTGCTCAAATTGGAGAGTTTGCTTTTGTTCTCCTAAGCCGTGCCTCAAATCTTCATCTCATTGGGGGGAAAGTTTATCTGCTACTTCTTGGAACAACAGCACTTAGTCTAGTGACCACCCCTCTTGTGTTCAAATTGGTACCTGCTGTGCTGAATTTAGGGGTTCTCATGCATTGGTTCCCCTCTGAAAACATCATTCAAAGCGAGCCAACCTTAAGCTCATCTGCCAAACCCAAACCAACCAAATTGAAAACTCCATCACTTCCTCACTTCTCCTCCGCTGCCGGGCGTCCACCTGCGTCTCCGCGCGGCGGAGTCACCGTCATGAGGCTTGTGGTGCCTCTGCAAGGCGTTGTCCAAGGCCGTGGAGGTCTCTTGTTGGGCTCTCTCATTCCCTGTGCTCTCTTCTACTTCCTCCAACTTTATCTCAAGCGAAATCGTTCTCCCAACTCTGACTCCTCCTCGAATTCTCCGTCCCATTCTCACTCTTCCTCTAACCTCGTCGACCTCAACCGCTCGTCCTCTCGCTCTAATCTACTAACGCGCGGATCCGTTGGTCGAGTTCGGCTTTCTTCTCGAGCCAGTTCGATTGCGAAGCCCAATAACTCCCCCTACTATATTGGATTGGATCGCGTTCGGGAGGATCCTTACGATAGGTTGGATAATCCGAATGGGATTATTCAGCTTGGGTTGTCCGAGAATAGGTTGTGCTTTGATTTGCTTGAGAAATGGATATCGGAGAATTATACTGGTTCCGTTGGTGGAGGCAATAGCGTCGAGTTGAATATTATGGGGATGACTACTTACCAGCCTTTCGATGGATTGTGGGAGCTGAAAATGGCTATGGCAGGTTTCATGTCTCAGGTAATGGGTGGTGGAGTGGCTTTTGATCCATCACAATTATTGTTAACATCTGGTGCCACTGCCGCGGTCGAGGTACTCTGTTTCTGCTTAGCAGACCCTGGAAATGCATTTCTTATTCCAACTCCTTATTATCCTGGTTTTGATAGAGATGTGAAGTGGAGAACTGGAGTGGATTTAATACCAGTTCACTGTCGTAGTGCTGACAACTTTAACTTGAACATCACTGTACTAGAGCAAGCATACAATCAAGCAAGGAAGCGAGGAATAAAAGTTCGGGGAGTTCTTTTATCTAACCCTGCAAATCCAGTTGGCAACATGTTGCCCCGAGAAATGCTGTACAGTATTTTAGATTTTGCCCAAGAGAAGAATATCCATGTTGTATCTGATGAGATATTTGCAGGGTCAGTTTATGGAAACGACGAGTTTGTGAGCATGGCTGAAATGATTGATTCAGAAGATATTGACAAGAATAGAGTTCATATAGTGTATGGACTGTCGAAAGACCTCTCTCTTCCTGGCCTTAGAGTTGGTGTCATCTATTCACAAAATGAAAATGTTTTGGCTGCTGCTAGAAAAATGGCAAGATTTTGCCCGATTTCCGCACCAACCCAGCAGCTTGTTACCTTGATGCTTTTGGACAGAACCTTCGTTAATGAATACCTGGAGACGAGCAAAAAGAGGATTCGCGAGATGCATGTTCTTTTCGTGGCTGGTTTGAAACAGTTGGGAATCAAGTGTGCAAAGAGCAGTGCTGGTTTTTACTGCTGGGCTGATATGAGTGGACTGATGAATTCTTATAGTGAGAAAGGGGAGCTAGAATTATGGGAGAAGCTGCTGAATGTAGCTAAAATTAACGCGACTCCTGGATCTGCTTGTCATTGCATAGAACCTGGATGGTTTAGATGTTGTTTCACTACACTTTCACGAGAGGATTTATTGATCGTTATAGAAAGGATTAGAAAAATGGCCGTTACGTGCAAATCTCCCAGTTGA 3384 43.38 MARRGGAIGSWLCIVLVLISAQIHVSPRSDKEIRERFYGNLINSTAPISGDGSIAQMFDKVLEKEFPDNDLPEGSSGSSFNNSVADQEAELETVAKITHEKGKKNDSQKAKYGTKTVAFVLISELFYYIHGTRAFQFQDVFSLENEESDDVMTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEMVQVETVAQFGVVFLLFALGLEFSLTKLKVVGAVAVFGGFLQIIIFMFLCGIIAMLSGAKLSEGVFVGSFLSMSSTAVVVKFLVERNSSNTLHGQVTIGTLILQDCAVGLLFALLPVLGGHNGLILGMISMGKLLLVLSVYLTVASILSWSFVPRFLKLMMQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFVAGVMISTTDFGQHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWSHLDILLASVMLVVFVKTAVVTVVAKAFGYSIRTSFQVGVMLAQIGEFAFVLLSRASNLHLIGGKVYLLLLGTTALSLVTTPLVFKLVPAVLNLGVLMHWFPSENIIQSEPTLSSSAKPKPTKLKTPSLPHFSSAAGRPPASPRGGVTVMRLVVPLQGVVQGRGGLLLGSLIPCALFYFLQLYLKRNRSPNSDSSSNSPSHSHSSSNLVDLNRSSSRSNLLTRGSVGRVRLSSRASSIAKPNNSPYYIGLDRVREDPYDRLDNPNGIIQLGLSENRLCFDLLEKWISENYTGSVGGGNSVELNIMGMTTYQPFDGLWELKMAMAGFMSQVMGGGVAFDPSQLLLTSGATAAVEVLCFCLADPGNAFLIPTPYYPGFDRDVKWRTGVDLIPVHCRSADNFNLNITVLEQAYNQARKRGIKVRGVLLSNPANPVGNMLPREMLYSILDFAQEKNIHVVSDEIFAGSVYGNDEFVSMAEMIDSEDIDKNRVHIVYGLSKDLSLPGLRVGVIYSQNENVLAAARKMARFCPISAPTQQLVTLMLLDRTFVNEYLETSKKRIREMHVLFVAGLKQLGIKCAKSSAGFYCWADMSGLMNSYSEKGELELWEKLLNVAKINATPGSACHCIEPGWFRCCFTTLSREDLLIVIERIRKMAVTCKSPS 1127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9499886 9510707 - CmaCh18G011970.1 Cma18g01197 314535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01197 1127 Pfam Aminotransferase class I and II 736 1116 IPR004839 GO:0009058|GO:0030170
Cma18g01197 1127 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 961 974 IPR004838 GO:0003824|GO:0009058|GO:0030170
Cma18g01197 1127 Gene3D - 178 561 IPR038770 -
Cma18g01197 1127 Gene3D - 758 1010 IPR015421 GO:0003824
Cma18g01197 1127 MobiDBLite consensus disorder prediction 580 611 - -
Cma18g01197 1127 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 610 1122 - -
Cma18g01197 1127 Gene3D Aspartate Aminotransferase, domain 1 724 1115 IPR015422 GO:0003824
Cma18g01197 1127 Pfam Sodium/hydrogen exchanger family 185 554 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cma18g01197 1127 SUPERFAMILY PLP-dependent transferases 712 1119 IPR015424 -
Cma18g01197 1127 Coils Coil 864 884 - -
Cma18g01197 1127 MobiDBLite consensus disorder prediction 658 682 - -
Cma18g01197 1127 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 831 852 - -
Cma18g01197 1127 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 955 979 - -
Cma18g01197 1127 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 772 788 - -
Cma18g01197 1127 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 738 764 - -
Cma18g01197 1127 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 987 1010 - -
Cma18g01197 1127 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 885 909 - -
Cma18g01197 1127 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 809 829 - -
Cma18g01197 1127 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 921 944 - -
Cma18g01197 1127 PANTHER AMINOTRANSFERASE ACS12-RELATED 610 1122 - -
Cma18g01197 1127 CDD AAT_like 774 1118 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma15g01179 Cma18g01197 CCT
Cma15g01179 Cma18g01197 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01517 Cma-Chr2:8650601 Cma18g01197 Cma-Chr18:9499886 0 dispersed
Cma10g00712 Cma-Chr10:3201645 Cma18g01197 Cma-Chr18:9499886 0 dispersed
Cma12g00636 Cma-Chr12:3375519 Cma18g01197 Cma-Chr18:9499886 0 dispersed
Cma15g01179 Cma-Chr15:7462460 Cma18g01197 Cma-Chr18:9499886 0 dispersed
Cma18g01197 Cma-Chr18:9499886 Cma10g00702 Cma-Chr10:3155561 1.00E-137 dispersed
Cma19g00500 Cma-Chr19:5897011 Cma18g01197 Cma-Chr18:9499886 2.11E-29 dispersed
Cma18g01197 Cma-Chr18:9499886 Cma05g00096 Cma-Chr5:411737 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01197 - - csv:101207607 962.214