Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01198 ATGAGTTGCTATACAAAATCGAAGTTTGCGATTGATGCCTTTCGGAGCTTGTCTTCGAAGATTTTCCCCAAAGATTCAACTCGTGATTGTGGATCAAGAATTTCCCGTAGTGGCCATTGGTTTAAGGCTCAATCGGCTTCTCCAATCATACAAAGATTTGGAAGACAAGTTGGAGAGAATAGGAAGCTATGCAATCCCTTTTTGGGTGGTTCGAAGAGATTTTACTATGTCGATCGCTATCGCGTCGAGCATTTTAAGCCCAGAGGACCTCGGCGATGGTTTGAAGATCCGAGGAACTTATTGATAGTTGTGATTGCGGGTTCTGGAGTTTGTGTGACAGTGTATTATGGGAATTTAGAAACCATACCTTATACCAAACGGAGGCATTTTGTGCTGTTATCGAGAGCTATGGAGAGGAGGCTTGGAGAGTCGCAATTTGAGCAAATGAAGGCAGCCTTTAAGGGTAAAATATTGCCTGCTGTACACCCAGAAAGTGTGAGGGTAAGATTGATAGCTAAGGATATAATTGAGGCATTACAAAGAGGGTTGAGGCAAGAGAATGTGTGGAGTGATTTAGGCTATGCATCAGAGGCTGTGATGGGAGCCCCTGAAGGTAGTGGCCATGAGACATTGATGGCGCTTAGGAGTTCTGGGGCTGAGAAGATGGAAGATAAATGGTACGGCGAAGACGAGATTCTTGATGACAAATGGGTTGAGAGCTCTAGGAAGAAGGGCCAGGAAAAGGGTTCCCAAGCAAATACTTCACATTTGGATGGATTGAACTGGGAGGTTTTGGTGGTGAATGAACCGGTTGTTAATGCATTTTGCTTGCCTGGTGGGAAGATTGTTGTTTTCACTGGCTTGCTCGAGCACTTTAGAAAGGATGCAGAAATTGCAACTATTATTGGTCATGAGGTTGGGCATGCTGTGGCTCGACATTCTGCTGAGGGTATTACGAAGAACCTGGGGTTTGCCGTTTTGCAACTTATCCTTTATCAGTTCATCATGCCTGATATTGTCAACACTATGTCAACTCTTTTCTTGAGGCTTCCTTTCTCTAGAAAGATGGAAATGGAAGCAGATTACATTGGTTTGCTTTTGATCGCCTCCGCTGGATATGACCCGAGGGTTGCACCCGCCGTATACGAGACGTTGGGTAAGGTCACTGGTGAGTCCGCACTAAGAGATTATCTCTCTACTCATCCATCTGGAAAGAAGAGGGCACAGTTGCTAGCCCAAGCCAAGGTTATGGAGGAAGCCCTCACTGTTTACAGAGAAGCAAGAGCCGGACATGGGGTTGAAGGCTTCCTATAA 1314 45.43 MSCYTKSKFAIDAFRSLSSKIFPKDSTRDCGSRISRSGHWFKAQSASPIIQRFGRQVGENRKLCNPFLGGSKRFYYVDRYRVEHFKPRGPRRWFEDPRNLLIVVIAGSGVCVTVYYGNLETIPYTKRRHFVLLSRAMERRLGESQFEQMKAAFKGKILPAVHPESVRVRLIAKDIIEALQRGLRQENVWSDLGYASEAVMGAPEGSGHETLMALRSSGAEKMEDKWYGEDEILDDKWVESSRKKGQEKGSQANTSHLDGLNWEVLVVNEPVVNAFCLPGGKIVVFTGLLEHFRKDAEIATIIGHEVGHAVARHSAEGITKNLGFAVLQLILYQFIMPDIVNTMSTLFLRLPFSRKMEMEADYIGLLLIASAGYDPRVAPAVYETLGKVTGESALRDYLSTHPSGKKRAQLLAQAKVMEEALTVYREARAGHGVEGFL 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9511233 9514494 + CmaCh18G011980.1 Cma18g01198 314536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01198 437 PANTHER METALLOENDOPEPTIDASE OMA1 72 429 - -
Cma18g01198 437 CDD M48C_Oma1_like 258 420 - -
Cma18g01198 437 Pfam Peptidase family M48 253 413 IPR001915 GO:0004222|GO:0006508
Cma18g01198 437 Gene3D Metalloproteases ("zincins"), catalytic domain 248 317 - -
Cma18g01198 437 PANTHER METALLOENDOPEPTIDASE OMA1, MITOCHONDRIAL 72 429 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma16g00169 Cma18g01198 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00169 Cma-Chr16:739332 Cma18g01198 Cma-Chr18:9511233 3.08E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01198 K23010 - csv:101206881 734.176