Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01202 ATGACGGAGGTTTACTGTAGAATGCCAAGTGATGATTATATAGGTTCGCCGGCCAAATGCCGAGAGCGCCGGCGCCGTAGAATAGAAATGAGGCGATTAGCAGCAGTACTGTCGGCGAAACCCTCGCCATCGCCGTCGACCAGTCACCACCACCGGAAGGAGAACCAAACTGAGAGTTCCGGTTTTGAGAAGAAGCGTGTTCGGAAGACGGACGGCGGCGACACTCCGGAGGTTTTAACGTCTTCGTCTTCGGGGGAGGACGTGAACGCTGTAGTTGCTTCATCGTCGGTACCTCAGCCGGTGTTCGGGATGATGTCGGTATCTGGTAGATCACGTGAGATGGAGGACGCAGTATCGGTGAGCACGTGCCTTATTGGTCCAGAAAGGCGACTACCGGTGCATTTCTTCGCCGTCTATGATGGACATGGAGGCCCTCACGTGGCAACACTATGTATGGAGAAGATGCACGTGTTAGTACAGGAGGAATTGGCGCGCGTGGTGAATACGCGCGAGGAAACTGAGAGTATCGGTGGAGGAAGTAGCACGGAGGAGGAGGCGACTTGGAGAAGAGTGATGCGACGGAGCTTTGAGAGAATGGATGAAGTGGCACTCAATACTTGTGCCTGTGGGAGCGTCGGAGGCCAGTGTGCTTGCCATCCAATGGAGGTGGCTCTCGGCGGTTCCACCGCCGTTGTCGCTGTGCTCACGCCGGATCATATAGTCGTTGCCAACTGCGGTGACTCACGCGCCGTCCTCTGTCGAGGAGGAAGGGCCATTCCGCTTTCCAATGATCACAAGCCTGATAGAATTGATGAACTAGCAAGGATCGAAGCTGCAGGAGGACAGGTGATTTTCATAGATGGAGCTCGTGTTAAAGGCATCCTTGCAATGTCCCGTGCAATTGGCGACAAATATCTCAAGTCAGTTGTAATATCAGAGCCAGAAATTACCTTCACCAAAAGAGAACCTGATGATGAATGTTTAATACTTGCAAGTGATGGTTTGTGGGATGTTCTTTCAAGTGAGTTGGCTTGTGAGATAGCTCGTGAATGTCTCCAGGAAACGGTCGCTGCTTCTAGCACTACAATAGATCTCAACGCCTTGCCTCAAATTGAAGAAGGGGCTGGAACTTCATATACCTCTCGTAGTTCAGTTGCTGCAGCACTGCTTACTCGTCTTGCTTTGGGGCGGAAAAGCACCGACAATATCAGTGTCATAGTTATCGATCTAAAGAGGAGCTAA 1242 51.69 MTEVYCRMPSDDYIGSPAKCRERRRRRIEMRRLAAVLSAKPSPSPSTSHHHRKENQTESSGFEKKRVRKTDGGDTPEVLTSSSSGEDVNAVVASSSVPQPVFGMMSVSGRSREMEDAVSVSTCLIGPERRLPVHFFAVYDGHGGPHVATLCMEKMHVLVQEELARVVNTREETESIGGGSSTEEEATWRRVMRRSFERMDEVALNTCACGSVGGQCACHPMEVALGGSTAVVAVLTPDHIVVANCGDSRAVLCRGGRAIPLSNDHKPDRIDELARIEAAGGQVIFIDGARVKGILAMSRAIGDKYLKSVVISEPEITFTKREPDDECLILASDGLWDVLSSELACEIARECLQETVAASSTTIDLNALPQIEEGAGTSYTSRSSVAAALLTRLALGRKSTDNISVIVIDLKRS 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9526783 9533522 + CmaCh18G012020.1 Cma18g01202 314540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01202 413 CDD PP2Cc 101 410 IPR001932 -
Cma18g01202 413 ProSitePatterns PPM-type phosphatase domain signature. 135 143 IPR000222 GO:0043169
Cma18g01202 413 SMART PP2C_SIG_2 115 410 IPR001932 -
Cma18g01202 413 Pfam Protein phosphatase 2C 102 356 IPR001932 -
Cma18g01202 413 MobiDBLite consensus disorder prediction 47 73 - -
Cma18g01202 413 Gene3D - 89 413 IPR036457 -
Cma18g01202 413 ProSiteProfiles PPM-type phosphatase domain profile. 101 410 IPR001932 -
Cma18g01202 413 PANTHER PROTEIN PHOSPHATASE 2C 75-RELATED 41 412 - -
Cma18g01202 413 SUPERFAMILY PP2C-like 93 411 IPR036457 -
Cma18g01202 413 MobiDBLite consensus disorder prediction 33 90 - -
Cma18g01202 413 MobiDBLite consensus disorder prediction 75 90 - -
Cma18g01202 413 SMART PP2C_4 91 408 IPR001932 -
Cma18g01202 413 PANTHER ALPHABET, ISOFORM E-RELATED 41 412 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma16g00168 Cma18g01202 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00062 Cma-Chr16:273810 Cma18g01202 Cma-Chr18:9526783 4.57E-74 dispersed
Cma01g00625 Cma-Chr1:3268907 Cma18g01202 Cma-Chr18:9526783 7.11E-89 transposed
Cma15g00106 Cma-Chr15:484972 Cma18g01202 Cma-Chr18:9526783 2.33E-80 transposed
Cma16g00168 Cma-Chr16:732523 Cma18g01202 Cma-Chr18:9526783 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01202 K14497 - csv:101206634 610.527