Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01214 ATGTTTCAGACAATGGCTAAAAATGCGACAGTCTTGTTTCTAATGATGATTGTTTGTGTGTCGGAAGCAGTTCTTGATACCAATTACTACTCTAAAACATGTCCCAATGCCGAGAAAATCATCCTCCAAACCGTCTACAATGCTTCCATTCATGACCCCAAAGTCCCTGCCCGTCTTCTCAGGCTCTTCTTCCACGACTGTTTCATAAGGGGATGCGATGCATCAGTGCTGATAGATTCAGCGCCAGGGAATCAGGCAGAGAAAGATGCACCTCCAAACATCTCGTTAAGGTCGTTTTATGTGATCGACGAGGCCAAATCCAAGCTTGAAACTGCTTGCCCACATTCTGTTTCTTGTGCTGATATTGTCGCCATTGCTGCTAGAGATGTTGTTACTCTGTCTGGGGGGCCATATTGGAGTGTACTCAAAGGAAGGAAAGATGGGAAGATTTCCAATGCTTCTGAAACCATCAACTTACCAGCTCCAACTTTCAATGTATCTCAACTAATCCAGAGCTTTGCAAACAGAGGATTGCAAGTTAAAGACTTGGTTGCTCTATCCGGGGCTCATACGCTTGGGTTCTCCCACTGTTCTTCCTTTCAATCTAGACTTCGCAACTTTAGCTCGCTTCATGATACTGATCCAACTTTGGAATCTGGGTTTACTCAAATTCTGAAAAACAAATGTCCAAAACCAAATTTGGACAAAAATGCAGGACAGTTCTTGGACCCAACTTCCTCAACGTTTGATAATGTGTATTACAAGAGACTGTTGGAAGGGAAGGGTGTGTTTGGTTCAGATCAATCTCTGTTTGGTGATTCAAGAACTAAAACGATTGTTGAATCGTTTGCTAATGATCAGAACTTGTTCTTTAAGGAATTTGCAGCTTCAATGGTGAAATTGGGTAATGTTGGGGTTATTGAAAATGGCAATGTCAGATTCAATTGCAGGGTGGTGAACTGA 963 42.37 MFQTMAKNATVLFLMMIVCVSEAVLDTNYYSKTCPNAEKIILQTVYNASIHDPKVPARLLRLFFHDCFIRGCDASVLIDSAPGNQAEKDAPPNISLRSFYVIDEAKSKLETACPHSVSCADIVAIAARDVVTLSGGPYWSVLKGRKDGKISNASETINLPAPTFNVSQLIQSFANRGLQVKDLVALSGAHTLGFSHCSSFQSRLRNFSSLHDTDPTLESGFTQILKNKCPKPNLDKNAGQFLDPTSSTFDNVYYKRLLEGKGVFGSDQSLFGDSRTKTIVESFANDQNLFFKEFAASMVKLGNVGVIENGNVRFNCRVVN 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9599503 9600806 - CmaCh18G012140.1 Cma18g01214 314552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01214 320 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Cma18g01214 320 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g01214 320 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g01214 320 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g01214 320 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g01214 320 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g01214 320 PANTHER PEROXIDASE 25-RELATED 8 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g01214 320 Pfam Peroxidase 48 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g01214 320 ProSiteProfiles Plant heme peroxidase family profile. 24 320 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g01214 320 Gene3D - 28 320 - -
Cma18g01214 320 SUPERFAMILY Heme-dependent peroxidases 25 320 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma18g01214 320 Gene3D Peroxidase, domain 2 160 301 - -
Cma18g01214 320 PANTHER PEROXIDASE 66 8 319 - -
Cma18g01214 320 CDD secretory_peroxidase 25 319 IPR033905 GO:0004601|GO:0042744
Cma18g01214 320 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g01214 320 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g01214 320 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g01214 320 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g01214 320 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g01214 320 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g01214 320 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g01214 320 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g01214 320 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00004 Cma-Chr3:113766 Cma18g01214 Cma-Chr18:9599503 1.06E-95 dispersed
Cma03g00661 Cma-Chr3:5545692 Cma18g01214 Cma-Chr18:9599503 1.60E-113 dispersed
Cma07g00408 Cma-Chr7:1767659 Cma18g01214 Cma-Chr18:9599503 1.94E-120 dispersed
Cma09g00392 Cma-Chr9:1659169 Cma18g01214 Cma-Chr18:9599503 5.07E-83 dispersed
Cma18g01214 Cma-Chr18:9599503 Cma20g00633 Cma-Chr20:2948709 2.04E-92 dispersed
Cma18g01214 Cma-Chr18:9599503 Cma12g00394 Cma-Chr12:2033702 3.03E-124 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01214 K00430 - csv:101210306 559.681