Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01218 ATGTTGTCCACGAATTCCCCACGGCTTTTACAGCTCTTCCCCTTTTCCTTTATAAACTCTTCTCTGTTTTTTCCCCATTTCATTGCATCTGCTTCTGAGTTTGATTCTGATTCTGATTCTTTCATGTCTGACGATACTCAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATCGCCACCCCAAGTTCCGTGGAGTCCGCAGCCGAAGTGGCAAATGGGTCTCTGAAATCCGCCAGCCTCGACAGACCACTCGCATTTGGCTTGGTACCTACCCTACTCCTGACATGGCTGCAGCCGCCTACGACGTGGCTGCCCTCGCCCTTAAAGGCCCTGATGCTTCTCTTAATTTCCCAGACTCTCTCTTATCCTATCACATTCCTTCCTCCACTTCCCCTTCTGATATCCGCGCCGCTGCTGCTCTTGCCGCTGCTGCCAGACACCCCTACACTGCTCCTGCTCCTGCTCCTGCTGCACATACCCGCCCTGTTGGTGGGGCTGGGTTTTCCTCTGACGCTACGGCCGCCGCCGCCGCAGCTTCTGCCGGGGAGTTCGTGGACGAGGAAGAGCTACTGAACATGCCCAATTTACTGGTGGACATGGCTGAGGGAATGCTGGTGAGTCCACCCCGGATCAAGTCGCTGTCTTCCGATGACTCTCCCACAAATTCTCCAGGGGATGGATTATGGAGCTACTCCTAA 699 53.36 MLSTNSPRLLQLFPFSFINSSLFFPHFIASASEFDSDSDSFMSDDTQSSSSSSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALALKGPDASLNFPDSLLSYHIPSSTSPSDIRAAAALAAAARHPYTAPAPAPAAHTRPVGGAGFSSDATAAAAAASAGEFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPGDGLWSYS 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9619192 9619890 - CmaCh18G012180.1 Cma18g01218 314556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01218 232 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677
Cma18g01218 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 38 232 - -
Cma18g01218 232 MobiDBLite consensus disorder prediction 212 232 - -
Cma18g01218 232 MobiDBLite consensus disorder prediction 209 232 - -
Cma18g01218 232 ProSiteProfiles AP2/ERF domain profile. 62 118 IPR001471 GO:0003700|GO:0006355
Cma18g01218 232 Pfam AP2 domain 61 110 IPR001471 GO:0003700|GO:0006355
Cma18g01218 232 SMART rav1_2 62 124 IPR001471 GO:0003700|GO:0006355
Cma18g01218 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF027-LIKE 38 232 - -
Cma18g01218 232 MobiDBLite consensus disorder prediction 39 75 - -
Cma18g01218 232 PRINTS Ethylene responsive element binding protein signature 100 120 IPR001471 GO:0003700|GO:0006355
Cma18g01218 232 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Cma18g01218 232 Gene3D AP2/ERF domain 62 119 IPR036955 GO:0003700|GO:0006355
Cma18g01218 232 MobiDBLite consensus disorder prediction 39 61 - -
Cma18g01218 232 CDD AP2 61 120 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma15g01198 Cma18g01218 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01198 Cma-Chr15:7589726 Cma18g01218 Cma-Chr18:9619192 1.22E-42 dispersed
Cma16g01011 Cma-Chr16:7766235 Cma18g01218 Cma-Chr18:9619192 7.39E-44 dispersed
Cma18g01218 Cma-Chr18:9619192 Cma14g00287 Cma-Chr14:1229251 1.27E-42 dispersed
Cma18g01218 Cma-Chr18:9619192 Cma02g01485 Cma-Chr2:8491930 7.11E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36835 PF00847 AP2 1.30E-10 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01218 - - cmax:111467397 353.984