Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma18g01227 | ATGGCATCTTCTCGTTTGGCTGGAGGATTAGCGCAGTCTTCATCGAGTTCTGGGATTTTCTACCAAGGAGAAGGGCAGTCTTCAGCTATTGTTAATTCCCACTTGAGCCAATCATTTGCAAATTCATCGAGTTCAATTCCAGGAACTGGATGTTCTGATTTTGGTCCAGTTTCCGGAGACATGAATAATGCAGTTTTAAACAGTGTGGCAAATTCAGGACCCAGTGTGGGTGCAAGTTCATTGGTTACTGATGCAAACTCTTCGCTTTCAGGAGGGCCACATTTGCAAAGGAGTGCAAGCATCAATACGGAGTCATACATGCGCTTGCCTGCATCGCCTATGTCATTCAATTCAAATAACATTAGTGTGTCCGGTTCCTCAGTTATAGATGGATCCTGCGTGGTGCAGCAAAATTCTCAACAGGACCAAAATGTCCAACACATTCAGCAACAGGCACAGCAAGGTGCTTCACATGCCACATCATTTCCAACATCACAAATAGGCCAAGTACCACTTCCCCTGGGTGCAAAATTTCAGGTGTCTTTCATTCCAGATCCAAATAATTATTCTCAGATGCAGAAGAAACCACGACTGGATATAAAGCAGGAAGATGTGCTGCAACAGCAAGTTTTGCAGCAGCTATTTCAGAGACAGGATTCCATGCATCTGCAAAACAGTAACTCGCAGTTACAAGCTTTATTTCAACAACAAAGAATGCGACAACAGCAACAGATTTTGCAGTCTCTACCTCAGTACAGAGCTCAGTTTCAGCAGCAGCAGCAGCAGATACAGTTGAGGCAGCAATTGCAACAACCGCAGGCAATGCAGCCAGTATCACCCATGAAGCGCCCAATTGATGGTGGTGTTTGTTCTCGTCGGATGATGCAATATTTATATCATCAGCGGCAAAGGCCTCCTGAGAATAGTATAGCCTACTGGAGAAAGTTTGTGGCAGAGTATTACTCTCCTCGTGCGAAGAAAAGATGGTGCTTGTCATTGTACGAGAATGTTGGCCACCATGCTCTTGGTGTGTTTCCCCAGGCAGCTATGGATGCGTGGCACTGCGACATCTGTGGCTCCAAATCAGGAAGGGGATTTGAGGCCACATTTGAAGTTCTCCCAAGACTCAACGAGATCAAATTTGGAAGTGGAGTTATGGATGAGCTTTTATTTCTGGACCGTCCACATGAAAGGAGCTTTCCTTCTGGAATTATGATGTTAGAATATCGAAAAGCAATTCAAGAGAGTGTATATGAGCAACTTCGTGTTGTTCGTGAGGGTCATCTTCGTATCATATTCACACAAGACTTGAAGATTTTGTCTTGGGAATTTTGTGCACGGCGTCATGAAGAACTTCTTCCACGTAGGTTGGTTGCACCTCAGGTGAATCAGCTGTTACAGGTTGCCCAGAAAAGCCAAAGCACAATTGCTGAAAGTGGTCCTGATGGTGTCTCTCAGAAAGATTTGCAGGCAAATAGCAATATGGTACTGACGGCTGGTCGTCAGCTTGCTAAAAGTCTGGAGTTGCAGTTGCTGAATGACTTGGGTTTCTCTAAAAGATACGTGAGATGCTTGCAGATATCAGAGGTTGTCAACAGAATGAAAGATCTGATTGGCTTCTGCCGAGATCAAAAAGTTGGGCCTATTGAGGGCTTGAAAAATTATCCCAGACATGCCACTGCAGCCAAGCTCCAGATTCAGAAAATGCAGGAGATGGAGCAATTAGCAAGCATTCAAGGTCTTCCCACAGATCGCAACACAATGAATAAGCTGATGGCAATGCATTCTGAGCTTGATAATCATGGGATTAACAACCATCAAATGATTGGTCGAGGAGGTATGAGTGGTTCACAAGCCGCTTTGGCACTGACTACATACCAGAATATGCTCATGAGACAAAGCTCTATGAATTCCAACCCGAGCCCACACCAACAGGAGGCCTCGTCTTCTTTCAATAATGCCAACTATAATCCATCCCCTACACTCCATGGGACTGCATCTTTGATGCCTGGATCTATACAGAACTCCTCTGTCGGTGGCTTTTCAAGCGTTCAGCAAACCTTGCAAAAGCAATCGCAGCAGCTGCAGCAGCATCCACCGAATACTGGCTCCTTGGTCCAACAAAATCATCCTCAGACAATTCAAGGTAGCCAGGCCATACAACAACAGATGATCCAACAACTACTGCAGATATCAAGTAACAGTAAGAGTGGTGGTGCACAACAGCAGCCCCTGACCGGACCAATTGCAAATAGAAGTTTGGGAAGAAGGGGTATGAGTTTTGTGGGCAATAGTACATCAGTTGTAGCTGGGAGCAATGCCCCTGGCCCGAGTAGAAGCAATAGCTTCAAAGCTGCTTCAAATAACGAGTCCTCGGCTGGTAACAGTGGATTCAATCAGAAGGCTTCTGATTTGCAGCAAGATCTTCCTCTGCCCGAGGGTCTGGTAGAAGATATAGGCCAAGATTTCCCTGAAAATGGGTTTATGAACAATGACCTTGACGAGGATTTGGGTTATGTCTGGAAGGCTTGA | 2532 | 45.38 | MASSRLAGGLAQSSSSSGIFYQGEGQSSAIVNSHLSQSFANSSSSIPGTGCSDFGPVSGDMNNAVLNSVANSGPSVGASSLVTDANSSLSGGPHLQRSASINTESYMRLPASPMSFNSNNISVSGSSVIDGSCVVQQNSQQDQNVQHIQQQAQQGASHATSFPTSQIGQVPLPLGAKFQVSFIPDPNNYSQMQKKPRLDIKQEDVLQQQVLQQLFQRQDSMHLQNSNSQLQALFQQQRMRQQQQILQSLPQYRAQFQQQQQQIQLRQQLQQPQAMQPVSPMKRPIDGGVCSRRMMQYLYHQRQRPPENSIAYWRKFVAEYYSPRAKKRWCLSLYENVGHHALGVFPQAAMDAWHCDICGSKSGRGFEATFEVLPRLNEIKFGSGVMDELLFLDRPHERSFPSGIMMLEYRKAIQESVYEQLRVVREGHLRIIFTQDLKILSWEFCARRHEELLPRRLVAPQVNQLLQVAQKSQSTIAESGPDGVSQKDLQANSNMVLTAGRQLAKSLELQLLNDLGFSKRYVRCLQISEVVNRMKDLIGFCRDQKVGPIEGLKNYPRHATAAKLQIQKMQEMEQLASIQGLPTDRNTMNKLMAMHSELDNHGINNHQMIGRGGMSGSQAALALTTYQNMLMRQSSMNSNPSPHQQEASSSFNNANYNPSPTLHGTASLMPGSIQNSSVGGFSSVQQTLQKQSQQLQQHPPNTGSLVQQNHPQTIQGSQAIQQQMIQQLLQISSNSKSGGAQQQPLTGPIANRSLGRRGMSFVGNSTSVVAGSNAPGPSRSNSFKAASNNESSAGNSGFNQKASDLQQDLPLPEGLVEDIGQDFPENGFMNNDLDEDLGYVWKA | 843 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 9659453 | 9665827 | + | CmaCh18G012270.1 | Cma18g01227 | 314565 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma18g01227 | 843 | MobiDBLite | consensus disorder prediction | 734 | 749 | - | - | |
| Cma18g01227 | 843 | MobiDBLite | consensus disorder prediction | 734 | 813 | - | - | |
| Cma18g01227 | 843 | MobiDBLite | consensus disorder prediction | 758 | 806 | - | - | |
| Cma18g01227 | 843 | PANTHER | LIM DOMAIN-BINDING PROTEIN | 5 | 151 | IPR029005 | - | |
| Cma18g01227 | 843 | PANTHER | LIM DOMAIN-BINDING PROTEIN | 185 | 836 | IPR029005 | - | |
| Cma18g01227 | 843 | MobiDBLite | consensus disorder prediction | 633 | 719 | - | - | |
| Cma18g01227 | 843 | PANTHER | LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED | 185 | 836 | - | - | |
| Cma18g01227 | 843 | PANTHER | LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED | 5 | 151 | - | - | |
| Cma18g01227 | 843 | Pfam | LIM-domain binding protein | 293 | 553 | IPR029005 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma15g01411 | Cma18g01227 | CCT | |
| Cma15g01411 | Cma18g01227 | ECH | |
| Cma16g00145 | Cma18g01227 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma16g00145 | Cma-Chr16:635891 | Cma18g01227 | Cma-Chr18:9659453 | 0 | wgd | |
| Cma18g01227 | Cma-Chr18:9659453 | Cma02g01044 | Cma-Chr2:6218305 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma18g01227 | - | - | csv:105434391 | 1244.57 |