Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01227 ATGGCATCTTCTCGTTTGGCTGGAGGATTAGCGCAGTCTTCATCGAGTTCTGGGATTTTCTACCAAGGAGAAGGGCAGTCTTCAGCTATTGTTAATTCCCACTTGAGCCAATCATTTGCAAATTCATCGAGTTCAATTCCAGGAACTGGATGTTCTGATTTTGGTCCAGTTTCCGGAGACATGAATAATGCAGTTTTAAACAGTGTGGCAAATTCAGGACCCAGTGTGGGTGCAAGTTCATTGGTTACTGATGCAAACTCTTCGCTTTCAGGAGGGCCACATTTGCAAAGGAGTGCAAGCATCAATACGGAGTCATACATGCGCTTGCCTGCATCGCCTATGTCATTCAATTCAAATAACATTAGTGTGTCCGGTTCCTCAGTTATAGATGGATCCTGCGTGGTGCAGCAAAATTCTCAACAGGACCAAAATGTCCAACACATTCAGCAACAGGCACAGCAAGGTGCTTCACATGCCACATCATTTCCAACATCACAAATAGGCCAAGTACCACTTCCCCTGGGTGCAAAATTTCAGGTGTCTTTCATTCCAGATCCAAATAATTATTCTCAGATGCAGAAGAAACCACGACTGGATATAAAGCAGGAAGATGTGCTGCAACAGCAAGTTTTGCAGCAGCTATTTCAGAGACAGGATTCCATGCATCTGCAAAACAGTAACTCGCAGTTACAAGCTTTATTTCAACAACAAAGAATGCGACAACAGCAACAGATTTTGCAGTCTCTACCTCAGTACAGAGCTCAGTTTCAGCAGCAGCAGCAGCAGATACAGTTGAGGCAGCAATTGCAACAACCGCAGGCAATGCAGCCAGTATCACCCATGAAGCGCCCAATTGATGGTGGTGTTTGTTCTCGTCGGATGATGCAATATTTATATCATCAGCGGCAAAGGCCTCCTGAGAATAGTATAGCCTACTGGAGAAAGTTTGTGGCAGAGTATTACTCTCCTCGTGCGAAGAAAAGATGGTGCTTGTCATTGTACGAGAATGTTGGCCACCATGCTCTTGGTGTGTTTCCCCAGGCAGCTATGGATGCGTGGCACTGCGACATCTGTGGCTCCAAATCAGGAAGGGGATTTGAGGCCACATTTGAAGTTCTCCCAAGACTCAACGAGATCAAATTTGGAAGTGGAGTTATGGATGAGCTTTTATTTCTGGACCGTCCACATGAAAGGAGCTTTCCTTCTGGAATTATGATGTTAGAATATCGAAAAGCAATTCAAGAGAGTGTATATGAGCAACTTCGTGTTGTTCGTGAGGGTCATCTTCGTATCATATTCACACAAGACTTGAAGATTTTGTCTTGGGAATTTTGTGCACGGCGTCATGAAGAACTTCTTCCACGTAGGTTGGTTGCACCTCAGGTGAATCAGCTGTTACAGGTTGCCCAGAAAAGCCAAAGCACAATTGCTGAAAGTGGTCCTGATGGTGTCTCTCAGAAAGATTTGCAGGCAAATAGCAATATGGTACTGACGGCTGGTCGTCAGCTTGCTAAAAGTCTGGAGTTGCAGTTGCTGAATGACTTGGGTTTCTCTAAAAGATACGTGAGATGCTTGCAGATATCAGAGGTTGTCAACAGAATGAAAGATCTGATTGGCTTCTGCCGAGATCAAAAAGTTGGGCCTATTGAGGGCTTGAAAAATTATCCCAGACATGCCACTGCAGCCAAGCTCCAGATTCAGAAAATGCAGGAGATGGAGCAATTAGCAAGCATTCAAGGTCTTCCCACAGATCGCAACACAATGAATAAGCTGATGGCAATGCATTCTGAGCTTGATAATCATGGGATTAACAACCATCAAATGATTGGTCGAGGAGGTATGAGTGGTTCACAAGCCGCTTTGGCACTGACTACATACCAGAATATGCTCATGAGACAAAGCTCTATGAATTCCAACCCGAGCCCACACCAACAGGAGGCCTCGTCTTCTTTCAATAATGCCAACTATAATCCATCCCCTACACTCCATGGGACTGCATCTTTGATGCCTGGATCTATACAGAACTCCTCTGTCGGTGGCTTTTCAAGCGTTCAGCAAACCTTGCAAAAGCAATCGCAGCAGCTGCAGCAGCATCCACCGAATACTGGCTCCTTGGTCCAACAAAATCATCCTCAGACAATTCAAGGTAGCCAGGCCATACAACAACAGATGATCCAACAACTACTGCAGATATCAAGTAACAGTAAGAGTGGTGGTGCACAACAGCAGCCCCTGACCGGACCAATTGCAAATAGAAGTTTGGGAAGAAGGGGTATGAGTTTTGTGGGCAATAGTACATCAGTTGTAGCTGGGAGCAATGCCCCTGGCCCGAGTAGAAGCAATAGCTTCAAAGCTGCTTCAAATAACGAGTCCTCGGCTGGTAACAGTGGATTCAATCAGAAGGCTTCTGATTTGCAGCAAGATCTTCCTCTGCCCGAGGGTCTGGTAGAAGATATAGGCCAAGATTTCCCTGAAAATGGGTTTATGAACAATGACCTTGACGAGGATTTGGGTTATGTCTGGAAGGCTTGA 2532 45.38 MASSRLAGGLAQSSSSSGIFYQGEGQSSAIVNSHLSQSFANSSSSIPGTGCSDFGPVSGDMNNAVLNSVANSGPSVGASSLVTDANSSLSGGPHLQRSASINTESYMRLPASPMSFNSNNISVSGSSVIDGSCVVQQNSQQDQNVQHIQQQAQQGASHATSFPTSQIGQVPLPLGAKFQVSFIPDPNNYSQMQKKPRLDIKQEDVLQQQVLQQLFQRQDSMHLQNSNSQLQALFQQQRMRQQQQILQSLPQYRAQFQQQQQQIQLRQQLQQPQAMQPVSPMKRPIDGGVCSRRMMQYLYHQRQRPPENSIAYWRKFVAEYYSPRAKKRWCLSLYENVGHHALGVFPQAAMDAWHCDICGSKSGRGFEATFEVLPRLNEIKFGSGVMDELLFLDRPHERSFPSGIMMLEYRKAIQESVYEQLRVVREGHLRIIFTQDLKILSWEFCARRHEELLPRRLVAPQVNQLLQVAQKSQSTIAESGPDGVSQKDLQANSNMVLTAGRQLAKSLELQLLNDLGFSKRYVRCLQISEVVNRMKDLIGFCRDQKVGPIEGLKNYPRHATAAKLQIQKMQEMEQLASIQGLPTDRNTMNKLMAMHSELDNHGINNHQMIGRGGMSGSQAALALTTYQNMLMRQSSMNSNPSPHQQEASSSFNNANYNPSPTLHGTASLMPGSIQNSSVGGFSSVQQTLQKQSQQLQQHPPNTGSLVQQNHPQTIQGSQAIQQQMIQQLLQISSNSKSGGAQQQPLTGPIANRSLGRRGMSFVGNSTSVVAGSNAPGPSRSNSFKAASNNESSAGNSGFNQKASDLQQDLPLPEGLVEDIGQDFPENGFMNNDLDEDLGYVWKA 843
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
18 9659453 9665827 + CmaCh18G012270.1 Cma18g01227 314565
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01227 843 MobiDBLite consensus disorder prediction 734 749 - -
Cma18g01227 843 MobiDBLite consensus disorder prediction 734 813 - -
Cma18g01227 843 MobiDBLite consensus disorder prediction 758 806 - -
Cma18g01227 843 PANTHER LIM DOMAIN-BINDING PROTEIN 5 151 IPR029005 -
Cma18g01227 843 PANTHER LIM DOMAIN-BINDING PROTEIN 185 836 IPR029005 -
Cma18g01227 843 MobiDBLite consensus disorder prediction 633 719 - -
Cma18g01227 843 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 185 836 - -
Cma18g01227 843 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 5 151 - -
Cma18g01227 843 Pfam LIM-domain binding protein 293 553 IPR029005 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma15g01411 Cma18g01227 CCT
Cma15g01411 Cma18g01227 ECH
Cma16g00145 Cma18g01227 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00145 Cma-Chr16:635891 Cma18g01227 Cma-Chr18:9659453 0 wgd
Cma18g01227 Cma-Chr18:9659453 Cma02g01044 Cma-Chr2:6218305 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01227 - - csv:105434391 1244.57