Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01228 ATGGTTCTGAAACTAAGGGTTTTAGGTGAATCCAGAGAGGCGAGAACAGCTTTCTATCGATCATCAATGGCGGATGATGATTACAATGACGTTGACATGGGATATGAAGATGAGCCACCAGAGCCTGAGATGGAGGAAGGAGCTGAAGAAGAATTAGATAACAATAATGCCGATGATGTTCCTGGTGAACCTGTTGAAGCAGAGGATAAGGAAGATGAAGAACCTATTGAACGTGTGCGTAAAACCTCAAAATTTATGACGAAGTACGAACGTGCTAGAATTTTGGGTACTCGTGCCCTCCAAATCAGCATGAATGCTCCTGTCATGGTCGAGTTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAGCTTCGTGAGCGGAAGATACCCTTCACCATTCGTCGCTACCTGCCAGATGGAAGGTTAGGCTTCTTAGATCTTTTATTCTTTGTTTTTACAGAAACCTTAATTTTTATGAAGACTGGGGCGTTGATGAACTTATTGTGGAGGATTCTTGGAAGAGGCAAGTTGGTGGCGCTTGATCTAATCCTTAGTTGTGTGGCTGTCAGCGTATGTGAGATAATAGTTTCAACTGCATGGCGATTAGAGCCCCATGGTCCAATACAGTCATCTTTGAACGGTGAGATGGTTGCTCGCCATTATTGTTTTGTTATATAA 684 43.42 MVLKLRVLGESREARTAFYRSSMADDDYNDVDMGYEDEPPEPEMEEGAEEELDNNNADDVPGEPVEAEDKEDEEPIERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGRLGFLDLLFFVFTETLIFMKTGALMNLLWRILGRGKLVALDLILSCVAVSVCEIIVSTAWRLEPHGPIQSSLNGEMVARHYCFVI 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9666120 9668983 - CmaCh18G012280.1 Cma18g01228 314566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01228 227 PIRSF RPB6 23 147 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Cma18g01228 227 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 23 143 - -
Cma18g01228 227 SUPERFAMILY RPB6/omega subunit-like 23 144 IPR036161 GO:0003677|GO:0003899|GO:0006351
Cma18g01228 227 SMART RNA_pol_Rpb6_2 80 133 IPR006110 GO:0003677|GO:0003899|GO:0006351
Cma18g01228 227 PANTHER DNA-DIRECTED RNA POLYMERASES II AND V SUBUNIT 6B 23 143 - -
Cma18g01228 227 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 84 139 IPR006111 GO:0003677|GO:0003899|GO:0006351
Cma18g01228 227 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 87 101 IPR020708 GO:0003677|GO:0003899|GO:0006351
Cma18g01228 227 MobiDBLite consensus disorder prediction 29 72 - -
Cma18g01228 227 MobiDBLite consensus disorder prediction 22 79 - -
Cma18g01228 227 PIRSF RpoK/RPB6 21 153 IPR006111 GO:0003677|GO:0003899|GO:0006351
Cma18g01228 227 Pfam RNA polymerase Rpb6 82 133 IPR006110 GO:0003677|GO:0003899|GO:0006351
Cma18g01228 227 Gene3D - 24 149 IPR036161 GO:0003677|GO:0003899|GO:0006351
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01228 K03014 RPABC2, RPB6, POLR2F; DNA-directed RNA polymerases I, II, and III subunit RPABC2 - csv:101219320 175.637
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00144 Cma18g01228 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00144 Cma-Chr16:632794 Cma18g01228 Cma-Chr18:9666120 2.52E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g605 . . . . Bpe03g00134 . . Bma14g02062 Cmo16g00151 Cmo18g01251 . . . . Sed07g1061 . Cpe14g00122 Bhi01g01356 Tan01g0284 Cmetu04g3099 . Hepe07g0182 Mch10g0178 . . . . . . . . . Cone5ag0839 . . Lsi05g01256 . . Cme06g00972 . Blo09g00082 . . . . . . . . . Cma16g00144 Cma18g01228 Car16g00125 Car18g01132 Cpe09g00105 . . . . . . . . Cla05g00856 Cam05g0942 Cec05g0947 Cco05g0947 Clacu05g0929 Cmu05g0887 Cre05g0972 . Csa03g01686 Chy06g00919 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003726 1 2 1 1 1 1 2 2 1 1 1 2 2 1 2 2 2 2 2 2 2 1 2 1 1 1 1 2 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01228 Cma_Chr18 FPKM 37.661179 40.985142 30.951044 31.600204 46.227116 59.563087 45.541836 51.109005 52.581104 49.687824