Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01231 ATGGCCTCAAAATGGCCATCTCCCAAACCCACGAGAAAAATCTTCACCATCTCTCTAATCTTCCTCCTCTGCATTTTCGCTTACTTTCTCGGCCTCCGTCAACACCCCTCCTCCGCCGTCGCCCTCCTTCGCACCACCCCATGCACCACCCTCCTAAACACCACCACCACCGGTGCCGGGAAGCCCAGCTACTTCCCGGCATGCGGCATGGAGTACAGCGAGTACACGCCATGCGAGGACACGAGAAGGTCGCTGAAGTTCACAAGACACCGGCTGATTTACCGAGAGAGGCACTGCCCGGAGAAGGAGGAGATATTGAAGTGCCGTGTTCCTCCGCCGCCGGGGTACCGAAATCCGCTCCCATGGCCGGAGAGTAGAGATTACGCTTGGTACTTAAATGTGCCGCATAAATCCCTGACGGTGGAGAAGGCGGTGCAGAATTGGATAATATATGAAGGGGAAAGGTTCAGATTTCCCGGCGGAGGGACGATGTTCCCTAACGGAGCTGATGCGTACATTGATAAAATTGGGAAACTCATTAATATGAAAGATGGGTCCATCAGAACCGCCATTGATACCGGCTGTGGGGTGGGAAGTTGGGGAGCTTATCTTCTGTCAAGGGACATTGTAACCATGTCGTTTGCGCCAAGGGACACCCACGAAGCACAAGTTCAGTTCGCTTTGGAGCGAGGAGTTCCTGCGCTCATTGGCGTTCTCTCCTCCAAGAGACTGCCTTATCCTTCCTCTGCCTTTGACATGGCTCATTGCTCTCGCTGCCTCATTCCATGGCCACAACATGATGGCATCCTCCTCATCGAAGTCGATCGTGTTCTCCGCCCCGGCGGATACTGGATCCTCTCAGGCCCTCCCATCAACTTGAAGCAACACTGGAAAGGCTGGCAAAGAACAAAGGAAGATCTCAATTCTGAACAGCTAGCCATTGAAAGGTTAGCCAAAAGTCTCTGTTGGACTAAGCTTGTGGAAGATGGTGATATTGCCATTTGGCAGAAGCCCATCAATCACTTGGACTGCAAAACCAACCCCAAGAACAGCAACAATCCACCTTTCTGCAAGGCCCAAGATCCTGACAAAGCTTGGTATACAGAAATGCAAGCTTGTTTGACGCATTTGCCACAAGTTTCAAGCGGTAAGGAAATTGCAGGAGGGAAATTGGCAAGATGGCCAGAGAGGCTAAGTGCAATCCCACAAAGGGTTAGCAGGGGAACTGTAAAAGGGGTCACTGAAGAAACGTTCATTCATGATTCTGAGCTATGGAGGAAGAGGTTGTCATATTACAGAACCATCAACAATCAGTTGAGTCAGCCTGGACGGTACCGCAATTTCTTAGACATGAATGCTTTCTTGGGTGGATTTGCTGCTGCTCTGGTTGATGACCCAGTTTGGGTGATGAATGTTGTCCCTGTGGATGTCAAAGTCAATACGCTCGGAGTTATATACGATAGGGGTTTGATCGGCACGTATCAAGATTGGTGTGAGGCAATGTCTACATATCCAAGAACTTATGACTTCATTCATGCAGATTCAGTTTTTAGCCTCTATGAGAATAGATGTGAAATGGAAGATATTCTACTTGAGATGGACAGAATTCTGAGACCAGAAGGAAGCGTAATCTTCCGAGAAAACACCGATATATTGACGAAAATCAAGACGATAACCGATAAGTTGAACTGGAGCAGTCAAATTGTGCATTCTGAAGATGGATCTTATCGTATGGAGAAGCTTCTATTTGCAGTAAAAAACTATTGGACAGCACCTCCTGAGCATTCTAATCAACAAGGCTCTAAACCAACTTAA 1815 48.48 MASKWPSPKPTRKIFTISLIFLLCIFAYFLGLRQHPSSAVALLRTTPCTTLLNTTTTGAGKPSYFPACGMEYSEYTPCEDTRRSLKFTRHRLIYRERHCPEKEEILKCRVPPPPGYRNPLPWPESRDYAWYLNVPHKSLTVEKAVQNWIIYEGERFRFPGGGTMFPNGADAYIDKIGKLINMKDGSIRTAIDTGCGVGSWGAYLLSRDIVTMSFAPRDTHEAQVQFALERGVPALIGVLSSKRLPYPSSAFDMAHCSRCLIPWPQHDGILLIEVDRVLRPGGYWILSGPPINLKQHWKGWQRTKEDLNSEQLAIERLAKSLCWTKLVEDGDIAIWQKPINHLDCKTNPKNSNNPPFCKAQDPDKAWYTEMQACLTHLPQVSSGKEIAGGKLARWPERLSAIPQRVSRGTVKGVTEETFIHDSELWRKRLSYYRTINNQLSQPGRYRNFLDMNAFLGGFAAALVDDPVWVMNVVPVDVKVNTLGVIYDRGLIGTYQDWCEAMSTYPRTYDFIHADSVFSLYENRCEMEDILLEMDRILRPEGSVIFRENTDILTKIKTITDKLNWSSQIVHSEDGSYRMEKLLFAVKNYWTAPPEHSNQQGSKPT 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9683488 9687410 + CmaCh18G012310.1 Cma18g01231 314569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01231 604 Gene3D Vaccinia Virus protein VP39 162 327 IPR029063 -
Cma18g01231 604 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 96 300 IPR029063 -
Cma18g01231 604 PANTHER METHYLTRANSFERASE PMT15-RELATED 55 594 - -
Cma18g01231 604 CDD AdoMet_MTases 189 283 - -
Cma18g01231 604 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 424 550 IPR029063 -
Cma18g01231 604 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 55 594 IPR004159 GO:0008168
Cma18g01231 604 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 74 586 IPR004159 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01231 - - - csv:101216405 1023.08
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma16g00143 Cma18g01231 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01085 Cma-Chr16:8337197 Cma18g01231 Cma-Chr18:9683488 0 dispersed
Cma18g01231 Cma-Chr18:9683488 Cma19g00193 Cma-Chr19:1294351 0 dispersed
Cma14g02009 Cma-Chr14:14077083 Cma18g01231 Cma-Chr18:9683488 0 wgd
Cma16g00143 Cma-Chr16:629275 Cma18g01231 Cma-Chr18:9683488 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g787 Blo01g00407 Blo16g01146 Bda01g02237 . Bpe13g00480 . . . . Cmo18g01213 . Cma18g01231 . Car18g01100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00067 . . . . . . . . . Cpe07g00640 . . . . . . . . . . . . . . . Csa05g01687 Chy09g00629 .
Vvi16g607 . . . . . . . Bma14g02088 Cmo16g00150 Cmo18g01254 . . . . Sed02g1606 . Cpe14g00121 Bhi01g01355 Tan01g0280 Cmetu06g0945 . Hepe07g0181 Mch10g0177 . . . . . . . . . . . . Lsi05g01255 . . Cme06g00973 . . . . . . . . . . . Cma16g00143 Cma18g01231 Car16g00124 Car18g01135 . . . . . . . . . Cla05g00857 Cam05g0943 Cec05g0948 Cco05g0948 Clacu05g0930 Cmu05g0888 Cre05g0973 . Csa03g01687 Chy06g00920 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002128 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 3 1 2 2 2 2 2 2 2 2 3 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g01231 Cma_Chr18 FPKM 0.0 0.0 0.0 0.0 2.12804 2.020097 2.855328 0.116743 0.0 0.13858