Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g01234 ATGCCTAATGGTGCAATTGCTGACCCGAGCTTTCTGGCTTTCCCAATTCCCTGTTCATTGCCTAACTCCTCTGAATTCTCCAATTCCATAGGGAAAATGGATGGATATAGAGAAGCTTGTCTGCTTGGGGACAGCTTTGATCCGAATGGAGTTGTGAGGATGAGGGAAGATGAATATGATAGCAGATCAGGCAGCGACAACATCGATGGTGCTGTATCTGGGGATGATCAGGATGCTAACAACGAACAACGACGAAAAAGGAAGAAGTACCATAGGCATACCCCCCATCAGATCCAAGAGCTTGAGATTTTCTTCAAGGAATGTCCTCATCCAGATGATAAACAAAGGAGTGAGCTCAGTAGGAGGCTTGGTTTGGAGTCGAAGCAAGTGAAGTTTTGGTTTCAAAATCGTCGAACCCAGATGAAGACACAAATAGAACGCCATGAGAATGCAATTCTTAAGCACGAAAATGACAAGCTTCGGGCCGAGAATAGTGTGATGAAGGATGCTATTTCGAACCCAACATGCAATACGTGCGGTGGACCTTCAATTCCTGTTCATCTATCATTCGAGGAACACCAGCTTAGGATTGATAATGCCAGATTAAGGGATGAACTGCACCGGTTATATACCGTCACCAACAAGTTCTTGGGCTGGCCAGTTTTGCCCTTTGTCAATCATAGCTCTTCAGTGAGCTCTGACTCGTGCTTGGAACTTTCTGTTGGAAGAAATGGAATGGGAAATTTGAGTAACATTTCTGATCCTATGCCTATGGGGCTTAACTTGGGAAACGGACTTTTCAATGGTGACCCTGTGATGCCTATTAGTAAGTCTCAAATGGGCATGCCAGGCAATGATATACCAATTGACAGAACAATATATGTGGATCTTGCTTTGGCTGCTATGGATGAATTGGTTAAGGTGGCTCAAATTGATACTCCCCTTTGGATCAGAAGCCGGGATAGCAGTGGCAAAGAGACGTTGAACTTTGACGAATATTCCAGGACATTTCCTTCGTCGGCTGCCATGAAACACACTAATTGGACGACAGAGGCTACCAGAGATACTACAATGGTCATCATCAACAGCATGGCACTCATCGAGACGTTGATGGATGCAAACCGATGGGCGGAAATGTTTCCTTGTTTGATTGCTAGAGCCACAACAATCGATGTGATATCAAATGGCATGGGTGGAACTAGAAATGGATCATTACAATTGATGCATGCTGAACTTCGAGTACTTTCCCCGCTTGTTCCTGTTCGTACTCTTAAGTTCCTCCGCTTCTGCAAGCAGCATGCTGATGGTCTATGGGCTGTAGTTGATGTTTCCCTCGGAGAAGGCGCAGATGCAGACATGTTTTTCAGTTGCAGGAGGCTCCCTTCCGGCTGTATTGTGCAAGATATGCCTAATGGTTTCTCCAAGGTTACATGGGTGGAACATACAGAATATGATGAAACTGTTGTACACCAACTTTACCGCCAGATAATTAGTTGGGGCATCGGCTTTGGTTCGCAACGGTGGCTTGCTACCCTTCAAAGACAATGTGACTGTCTGGCAATTCTTATGTCTTCTACGGAAGATCCTGCAGGAATATCGCCACATGGTAGGCGAAGTATGCTGAAACTATCCCAGCGTATGGTTGATAACTTCTGTTCTGGGATTTGTACTTCGACATTGCATAAGTGGGACAAGCTTGTAGTTGGCAATATTAGTGAAGATGTAAAAATGATGGCTAGAAACAGCATCAACGATCCTGGCGAGCCACCGGGTATTGTGTTGAGCGCTTCAACTTCTGTTTGGATGCCAGTAACTCAGCAGAGATTGTTTGCATTCTTGCAAGACGAGTGCTTACGGAGCGAATGGGACATTTTATCCAATGGCAGGCCAATGATAGAGATGCTTTGCATATCAAAAGGCCAGGGACTGGATAACCGTGTTTCTCTCCTGCGCGCTAACCCCATGAATGCTAATGAGAACACCATGCTTATATTGCAAGAGAGTTGGACTGATATTTCAGGCTCACTGGTCGTTTACGCTCCGGTCGACACAGCCTCCGTTAACTTGGTGATGCGTGGAGAAGATTCTGCTTATGTATCACTACTACCTTCAGGATTCGCCATTCTCCCCGATGGCCCATCCAACTATGCTTGTACAAACAACGACAAAGACGGTTCGATCATGTCAGACATTAACAGTGGCTATGCTAGTGGATGCCTTCTCACAGTTGCATTCCAAATCTTGGTGAATAACCTTCCAACAGCCAAACTCACCGTTGAGTCAGTTGAGACAGTTAACAATCTCATTTCTTGCACCATCCAAAAGATCAAAGTCGCCCTTCGGGTATTGTAA 2352 45.32 MPNGAIADPSFLAFPIPCSLPNSSEFSNSIGKMDGYREACLLGDSFDPNGVVRMREDEYDSRSGSDNIDGAVSGDDQDANNEQRRKRKKYHRHTPHQIQELEIFFKECPHPDDKQRSELSRRLGLESKQVKFWFQNRRTQMKTQIERHENAILKHENDKLRAENSVMKDAISNPTCNTCGGPSIPVHLSFEEHQLRIDNARLRDELHRLYTVTNKFLGWPVLPFVNHSSSVSSDSCLELSVGRNGMGNLSNISDPMPMGLNLGNGLFNGDPVMPISKSQMGMPGNDIPIDRTIYVDLALAAMDELVKVAQIDTPLWIRSRDSSGKETLNFDEYSRTFPSSAAMKHTNWTTEATRDTTMVIINSMALIETLMDANRWAEMFPCLIARATTIDVISNGMGGTRNGSLQLMHAELRVLSPLVPVRTLKFLRFCKQHADGLWAVVDVSLGEGADADMFFSCRRLPSGCIVQDMPNGFSKVTWVEHTEYDETVVHQLYRQIISWGIGFGSQRWLATLQRQCDCLAILMSSTEDPAGISPHGRRSMLKLSQRMVDNFCSGICTSTLHKWDKLVVGNISEDVKMMARNSINDPGEPPGIVLSASTSVWMPVTQQRLFAFLQDECLRSEWDILSNGRPMIEMLCISKGQGLDNRVSLLRANPMNANENTMLILQESWTDISGSLVVYAPVDTASVNLVMRGEDSAYVSLLPSGFAILPDGPSNYACTNNDKDGSIMSDINSGYASGCLLTVAFQILVNNLPTAKLTVESVETVNNLISCTIQKIKVALRVL 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 9694311 9698287 + CmaCh18G012340.1 Cma18g01234 314572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g01234 783 SUPERFAMILY Bet v1-like 544 775 - -
Cma18g01234 783 SUPERFAMILY Bet v1-like 288 518 - -
Cma18g01234 783 SMART START_1 296 518 IPR002913 GO:0008289
Cma18g01234 783 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Cma18g01234 783 MobiDBLite consensus disorder prediction 57 94 - -
Cma18g01234 783 CDD START_ArGLABRA2_like 296 516 - -
Cma18g01234 783 Gene3D - 73 159 - -
Cma18g01234 783 Coils Coil 138 165 - -
Cma18g01234 783 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 37 781 IPR042160 -
Cma18g01234 783 ProSiteProfiles START domain profile. 287 521 IPR002913 GO:0008289
Cma18g01234 783 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 37 781 - -
Cma18g01234 783 Pfam START domain 297 517 IPR002913 GO:0008289
Cma18g01234 783 SUPERFAMILY Homeodomain-like 71 144 IPR009057 -
Cma18g01234 783 Pfam Homeodomain 87 142 IPR001356 GO:0003677
Cma18g01234 783 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Cma18g01234 783 SMART HOX_1 86 148 IPR001356 GO:0003677
Cma18g01234 783 CDD homeodomain 87 144 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma16g00140 Cma18g01234 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00018 Cma-Chr17:72796 Cma18g01234 Cma-Chr18:9694311 0 dispersed
Cma18g01234 Cma-Chr18:9694311 Cma02g00163 Cma-Chr2:753284 0 dispersed
Cma14g02014 Cma-Chr14:14093630 Cma18g01234 Cma-Chr18:9694311 0 wgd
Cma16g00140 Cma-Chr16:612841 Cma18g01234 Cma-Chr18:9694311 0 wgd
Cma18g01234 Cma-Chr18:9694311 Cma08g00920 Cma-Chr8:5742070 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36837 PF01852 START 2.70E-44 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g01234 K09338 - csv:101218216 1345.49